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ONTOLOGY REPORT - ANNOTATIONS

Term:forebrain development
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Accession:GO:0030900 term browser browse the term
Definition:The process whose specific outcome is the progression of the forebrain over time, from its formation to the mature structure. The forebrain is the anterior of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions).
Synonyms:exact_synonym: prosencephalon development

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forebrain development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a2 aldehyde dehydrogenase 1 family member A2 acts_upstream_of_or_within ISO (PMID:16368932) MGI PMID:16368932 NCBI chrNW_004624781:13,756,469...13,845,253
Ensembl chrNW_004624781:13,756,390...13,845,479 		JBrowse link
G Apaf1 apoptotic peptidase activating factor 1 acts_upstream_of_or_within ISO (PMID:9216040) MGI PMID:9216040 NCBI chrNW_004624750:8,835,521...8,940,957
Ensembl chrNW_004624750:8,837,037...8,938,009 		JBrowse link
G Aplp1 amyloid beta precursor like protein 1 acts_upstream_of_or_within ISO (PMID:15385965) MGI PMID:15385965 NCBI chrNW_004624794:10,148,575...10,158,101
Ensembl chrNW_004624794:10,148,522...10,167,543 		JBrowse link
G Aplp2 amyloid beta precursor like protein 2 acts_upstream_of_or_within ISO (PMID:15385965)
(PMID:15689559)		 MGI PMID:15385965 PMID:15689559 NCBI chrNW_004624812:4,490,798...4,571,500
Ensembl chrNW_004624812:4,490,798...4,571,623 		JBrowse link
G App amyloid beta precursor protein acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:8001115)
(PMID:10200318)
(PMID:15385965)		 MGI
Ensembl		 PMID:8001115 PMID:10200318 PMID:15385965 GO_REF:0000107 NCBI chrNW_004624745:13,904,912...14,159,374
Ensembl chrNW_004624745:13,902,577...14,159,372 		JBrowse link
G Arhgap35 Rho GTPase activating protein 35 acts_upstream_of_or_within ISO (PMID:11044403) MGI PMID:11044403 NCBI chrNW_004624832:6,650,383...6,773,828
Ensembl chrNW_004624832:6,650,383...6,719,786 		JBrowse link
G Arid1a AT-rich interaction domain 1A acts_upstream_of_or_within ISO (PMID:23129809) MGI PMID:23129809 NCBI chrNW_004624764:10,672,673...10,759,634
Ensembl chrNW_004624764:10,672,735...10,759,634 		JBrowse link
G Arx aristaless related homeobox acts_upstream_of_or_within ISO (PMID:12379852) MGI PMID:12379852 NCBI chrNW_004624897:1,279,138...1,303,210 JBrowse link
G Ascl2 achaete-scute family bHLH transcription factor 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624767:15,107,157...15,111,696
Ensembl chrNW_004624767:15,107,159...15,109,191 		JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO (PMID:14681194)
(PMID:9268572)		 MGI PMID:9268572 PMID:14681194 NCBI chrNW_004624731:15,262,480...15,269,196
Ensembl chrNW_004624731:15,263,274...15,269,743 		JBrowse link
G Cckar cholecystokinin A receptor acts_upstream_of_or_within ISO (PMID:15152034) MGI PMID:15152034 NCBI chrNW_004624755:6,122,181...6,132,623
Ensembl chrNW_004624755:6,121,620...6,132,897 		JBrowse link
G Cdk5 cyclin dependent kinase 5 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:17694053) MGI
Ensembl		 PMID:17694053 GO_REF:0000107 NCBI chrNW_004624800:5,562,468...5,566,458
Ensembl chrNW_004624800:5,562,462...5,569,937 		JBrowse link
G Chrd chordin acts_upstream_of_or_within
involved_in		 ISO (PMID:12397106)
(PMID:10688202)		 MGI PMID:10688202 PMID:12397106 NCBI chrNW_004624730:72,201,239...72,209,843
Ensembl chrNW_004624730:72,201,644...72,209,843 		JBrowse link
G Cnp 2',3'-cyclic nucleotide 3' phosphodiesterase ISO RGD PMID:16876328 RGD:6483359 NCBI chrNW_004624795:1,856,455...1,861,142
Ensembl chrNW_004624795:1,855,992...1,861,053 		JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:15708565) MGI
Ensembl		 PMID:15708565 GO_REF:0000107 NCBI chrNW_004624730:77,876,361...77,887,228
Ensembl chrNW_004624730:77,875,257...77,887,234 		JBrowse link
G Dclk1 doublecortin like kinase 1 acts_upstream_of_or_within ISO (PMID:16387639) MGI PMID:16387639 NCBI chrNW_004624776:1,299,691...1,679,888
Ensembl chrNW_004624776:1,301,762...1,676,835 		JBrowse link
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17127040) Ensembl
MGI		 PMID:17127040 GO_REF:0000107 NCBI chrNW_004624791:11,313,139...11,316,998
Ensembl chrNW_004624791:11,313,142...11,315,982 		JBrowse link
G Dlc1 DLC1 Rho GTPase activating protein acts_upstream_of_or_within ISO (PMID:15710412) MGI PMID:15710412 NCBI chrNW_004624839:3,495,580...3,899,009
Ensembl chrNW_004624839:3,509,441...3,899,162 		JBrowse link
G Dnajb1 DnaJ heat shock protein family (Hsp40) member B1 ISO RGD PMID:9878698 RGD:10059325 NCBI chrNW_004624901:1,631,789...1,643,026
Ensembl chrNW_004624901:1,631,275...1,652,488 		JBrowse link
G Draxin dorsal inhibitory axon guidance protein involved_in ISO (MGI:3832346|PMID:19150847) UniProt PMID:19150847 MGI:3832346 NCBI chrNW_004624818:1,253,968...1,274,418
Ensembl chrNW_004624818:1,256,169...1,263,904 		JBrowse link
G Drd2 dopamine receptor D2 ISO RGD PMID:17175142 RGD:2311572 NCBI chrNW_004624784:8,828,589...8,906,617
Ensembl chrNW_004624784:8,827,006...8,865,529 		JBrowse link
G Dync2h1 dynein cytoplasmic 2 heavy chain 1 acts_upstream_of_or_within ISO (PMID:16229832) MGI PMID:16229832 NCBI chrNW_004624918:1,730,675...2,071,231
Ensembl chrNW_004624918:1,730,708...2,071,072 		JBrowse link
G E2f1 E2F transcription factor 1 acts_upstream_of_or_within ISO (PMID:15525772) MGI PMID:15525772 NCBI chrNW_004624842:5,602,432...5,612,951
Ensembl chrNW_004624842:5,602,432...5,612,951 		JBrowse link
G Emx2 empty spiracles homeobox 2 acts_upstream_of_or_within ISO (PMID:15917450)
(PMID:15294144)		 MGI PMID:15294144 PMID:15917450 NCBI chrNW_004624737:29,103,378...29,110,356
Ensembl chrNW_004624737:29,103,279...29,110,344 		JBrowse link
G Fezf1 FEZ family zinc finger 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16540508) Ensembl
MGI		 PMID:16540508 GO_REF:0000107 NCBI chrNW_004624783:13,715,987...13,719,287
Ensembl chrNW_004624783:13,713,422...13,718,604 		JBrowse link
G Fezf2 FEZ family zinc finger 2 acts_upstream_of_or_within ISO (PMID:15188439), (PMID:16284245) MGI PMID:15188439 PMID:16284245 NCBI chrNW_004624888:3,462,132...3,467,701
Ensembl chrNW_004624888:3,462,233...3,468,293 		JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 acts_upstream_of_or_within ISO (PMID:15708559) MGI PMID:15708559 NCBI chrNW_004624755:25,633,690...25,647,361
Ensembl chrNW_004624755:25,635,165...25,646,932 		JBrowse link
G Foxg1 forkhead box G1 acts_upstream_of_or_within ISO (PMID:14704420)
(PMID:12151532), (PMID:14566948), (PMID:7605629)		 MGI PMID:7605629 PMID:12151532 PMID:14566948 PMID:14704420 NCBI chrNW_004624820:3,542,767...3,547,180
Ensembl chrNW_004624820:3,543,687...3,545,147 		JBrowse link
G Foxp1 forkhead box P1 ISO RGD PMID:18561326 RGD:11561932 NCBI chrNW_004624773:5,543,529...6,076,522
Ensembl chrNW_004624773:5,543,536...5,883,131 		JBrowse link
G Foxp2 forkhead box P2 ISO RGD PMID:12815709 RGD:11536004 NCBI chrNW_004624827:4,813,203...5,086,326
Ensembl chrNW_004624827:4,817,092...5,086,488 		JBrowse link
G Frs2 fibroblast growth factor receptor substrate 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16239343) Ensembl
MGI		 PMID:16239343 GO_REF:0000107 NCBI chrNW_004624750:28,224,289...28,359,473 JBrowse link
G Fyn FYN proto-oncogene, Src family tyrosine kinase acts_upstream_of_or_within ISO (PMID:15073522)
(PMID:16162939)		 MGI PMID:15073522 PMID:16162939 NCBI chrNW_004624933:248,298...456,933
Ensembl chrNW_004624933:389,627...456,520 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (PMID:16168404) MGI PMID:16168404 NCBI chrNW_004624740:18,961,395...19,238,760
Ensembl chrNW_004624740:18,975,596...19,235,900 		JBrowse link
G Gnao1 G protein subunit alpha o1 ISO RGD PMID:8746812 RGD:2302010 NCBI chrNW_004624757:178,616...346,443 JBrowse link
G Gsc goosecoid homeobox acts_upstream_of_or_within ISO (PMID:17127040) MGI PMID:17127040 NCBI chrNW_004624734:7,367,030...7,369,081
Ensembl chrNW_004624734:7,367,277...7,368,817 		JBrowse link
G Hesx1 HESX homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24520934)
(PMID:17360769), (PMID:9620767)		 InterPro
MGI		 PMID:9620767 PMID:17360769 PMID:24520934 GO_REF:0000002 NCBI chrNW_004624822:74,344...102,484
Ensembl chrNW_004624822:74,373...101,828 		JBrowse link
G Hhex hematopoietically expressed homeobox acts_upstream_of_or_within ISO (PMID:15459110)
(PMID:10804184), (PMID:11291863)		 MGI PMID:10804184 PMID:11291863 PMID:15459110 NCBI chrNW_004624737:3,897,907...3,903,828
Ensembl chrNW_004624737:3,897,871...3,904,083 		JBrowse link
G Hspa8 heat shock protein family A (Hsp70) member 8 ISO RGD PMID:9878698 RGD:10059325 NCBI chrNW_004624880:2,070,410...2,075,069
Ensembl chrNW_004624880:2,070,523...2,079,421 		JBrowse link
G Htra2 HtrA serine peptidase 2 acts_upstream_of_or_within ISO (PMID:15509788) MGI PMID:15509788 NCBI chrNW_004624749:28,980,375...28,983,719
Ensembl chrNW_004624749:28,980,362...28,983,869 		JBrowse link
G Ift88 intraflagellar transport 88 acts_upstream_of_or_within ISO (PMID:28291836) MGI PMID:28291836 NCBI chrNW_004624776:16,954,368...17,086,377
Ensembl chrNW_004624776:16,954,507...17,086,337 		JBrowse link
G Ikzf1 IKAROS family zinc finger 1 acts_upstream_of_or_within ISO (PMID:15841184), (PMID:16467156) MGI PMID:15841184 PMID:16467156 NCBI chrNW_004624740:3,785,342...3,875,892
Ensembl chrNW_004624740:3,785,209...3,875,841 		JBrowse link
G Itgam integrin subunit alpha M involved_in ISO (MGI:3812233|PMID:18685038) ARUK-UCL PMID:18685038 MGI:3812233 NCBI chrNW_004624782:14,316,505...14,367,841
Ensembl chrNW_004624782:14,318,499...14,367,922 		JBrowse link
G Kcnc4 potassium voltage-gated channel subfamily C member 4 ISO RGD PMID:22473424 RGD:10411906 NCBI chrNW_004624772:5,967,042...6,004,647
Ensembl chrNW_004624772:5,967,071...5,991,484 		JBrowse link
G Kdm2b lysine demethylase 2B involved_in ISO (MGI:4949568|PMID:21220025) BHF-UCL PMID:21220025 MGI:4949568 NCBI chrNW_004624747:21,922,249...22,047,246 JBrowse link
G Kif3a kinesin family member 3A acts_upstream_of_or_within ISO (PMID:28291836) MGI PMID:28291836 NCBI chrNW_004624733:39,354,360...39,406,574
Ensembl chrNW_004624733:39,354,232...39,407,121 		JBrowse link
G Lrp2 LDL receptor related protein 2 acts_upstream_of_or_within ISO (PMID:15623804) MGI PMID:15623804 NCBI chrNW_004624787:6,797,462...6,998,859
Ensembl chrNW_004624787:6,798,938...6,998,697 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:15384171) MGI PMID:15384171 NCBI chrNW_004624752:25,605,444...25,756,573
Ensembl chrNW_004624752:25,605,302...25,751,893 		JBrowse link
G Mapk8ip3 mitogen-activated protein kinase 8 interacting protein 3 acts_upstream_of_or_within ISO (PMID:12897243)
(PMID:15572149)		 MGI PMID:12897243 PMID:15572149 NCBI chrNW_004624913:481,236...529,083
Ensembl chrNW_004624913:481,207...529,070 		JBrowse link
G Mecom MDS1 and EVI1 complex locus acts_upstream_of_or_within ISO (PMID:17029558) MGI PMID:17029558 NCBI chrNW_004624730:47,104,929...47,693,885
Ensembl chrNW_004624730:47,104,319...47,284,839 		JBrowse link
G Mrtfa myocardin related transcription factor A acts_upstream_of_or_within ISO (PMID:20534669) MGI PMID:20534669 NCBI chrNW_004624752:7,836,545...8,050,176
Ensembl chrNW_004624752:7,878,876...8,050,274 		JBrowse link
G Mrtfb myocardin related transcription factor B acts_upstream_of_or_within ISO (PMID:20534669) MGI PMID:20534669 NCBI chrNW_004624782:4,217,620...4,416,161
Ensembl chrNW_004624782:4,217,522...4,408,175 		JBrowse link
G Msx1 msh homeobox 1 acts_upstream_of_or_within ISO (PMID:15188430), (PMID:15217086) MGI PMID:15188430 PMID:15217086 NCBI chrNW_004624755:21,857,360...21,861,235
Ensembl chrNW_004624755:21,857,461...21,861,337 		JBrowse link
G Myo1d myosin ID ISO RGD PMID:8034741 RGD:633383 NCBI chrNW_004624875:544,065...877,958
Ensembl chrNW_004624875:543,260...877,953 		JBrowse link
G Ncor2 nuclear receptor corepressor 2 acts_upstream_of_or_within ISO (PMID:17928865) MGI PMID:17928865 NCBI chrNW_004624747:23,777,645...23,887,804
Ensembl chrNW_004624747:23,777,325...23,865,804 		JBrowse link
G Nde1 nudE neurodevelopment protein 1 acts_upstream_of_or_within ISO (PMID:15473967) MGI PMID:15473967 NCBI chrNW_004624782:236,715...284,200
Ensembl chrNW_004624782:236,735...268,516 		JBrowse link
G Ndst1 N-deacetylase and N-sulfotransferase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16020517) Ensembl
MGI		 PMID:16020517 GO_REF:0000107 NCBI chrNW_004624774:9,758,459...9,821,309
Ensembl chrNW_004624774:9,758,809...9,821,309 		JBrowse link
G Neurog1 neurogenin 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624733:11,497,872...11,499,957
Ensembl chrNW_004624733:11,498,249...11,498,974 		JBrowse link
G Neurog2 neurogenin 2 acts_upstream_of_or_within ISO (PMID:15328020) MGI PMID:15328020 NCBI chrNW_004624838:6,324,036...6,325,511 JBrowse link
G Neurog3 neurogenin 3 involved_in ISO
IEA		 RGD
TreeGrafter		 PMID:9130143 GO_REF:0000118 RGD:633362 NCBI chrNW_004624754:3,817,400...3,818,047 JBrowse link
G Nfib nuclear factor I B acts_upstream_of_or_within ISO (PMID:15632069) MGI PMID:15632069 NCBI chrNW_004624736:18,372,418...18,586,390
Ensembl chrNW_004624736:18,377,624...18,586,424 		JBrowse link
G Nfix nuclear factor I X acts_upstream_of_or_within ISO (PMID:30503862) MGI PMID:30503862 NCBI chrNW_004624901:551,277...645,435
Ensembl chrNW_004624901:550,931...646,417 		JBrowse link
G Nkx2-1 NK2 homeobox 1 involved_in ISO (PMID:15494458) UniProt PMID:15494458 NCBI chrNW_004624838:300,902...304,944
Ensembl chrNW_004624838:300,458...305,517 		JBrowse link
G Nog noggin involved_in ISO (PMID:10688202)
(PMID:12397106)		 RGD
MGI		 PMID:10688202 PMID:12397106 PMID:14643011 RGD:1358324 NCBI chrNW_004624795:11,696,102...11,697,367
Ensembl chrNW_004624795:11,696,353...11,697,051 		JBrowse link
G Notch1 notch receptor 1 acts_upstream_of_or_within ISO (PMID:16120638) MGI PMID:16120638 NCBI chrNW_004624760:1,636,331...1,676,398
Ensembl chrNW_004624760:1,634,702...1,676,531 		JBrowse link
G Notch3 notch receptor 3 acts_upstream_of_or_within ISO (PMID:16120638) MGI PMID:16120638 NCBI chrNW_004624901:2,292,257...2,328,433
Ensembl chrNW_004624901:2,292,640...2,328,433 		JBrowse link
G Nr2f1 nuclear receptor subfamily 2 group F member 1 acts_upstream_of_or_within ISO (PMID:15548577) MGI PMID:15548577 NCBI chrNW_004624743:12,479,427...12,488,178
Ensembl chrNW_004624743:12,478,832...12,488,458 		JBrowse link
G Nr2f2 nuclear receptor subfamily 2 group F member 2 acts_upstream_of_or_within ISO (PMID:15548577) MGI PMID:15548577 NCBI chrNW_004624768:7,713,771...7,728,102
Ensembl chrNW_004624768:7,701,674...7,728,408 		JBrowse link
G Numb NUMB endocytic adaptor protein acts_upstream_of_or_within ISO (PMID:14687546) MGI PMID:14687546 NCBI chrNW_004624734:27,994,662...28,144,719 JBrowse link
G Numbl NUMB like endocytic adaptor protein acts_upstream_of_or_within ISO (PMID:14687546) MGI PMID:14687546 NCBI chrNW_004624925:595,679...623,479
Ensembl chrNW_004624925:596,448...622,641 		JBrowse link
G Ogt O-linked N-acetylglucosamine (GlcNAc) transferase ISO RGD PMID:22928023 RGD:9590181 NCBI chrNW_004624903:1,863,110...1,912,299
Ensembl chrNW_004624903:1,863,337...1,910,177 		JBrowse link
G Otx1 orthodenticle homeobox 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:15917450)
(PMID:15201224)		 MGI
Ensembl		 PMID:15201224 PMID:15917450 GO_REF:0000107 NCBI chrNW_004624762:10,379,775...10,388,262
Ensembl chrNW_004624762:10,379,917...10,386,708 		JBrowse link
G Otx2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO (PMID:15917450)
(PMID:15201223)
(PMID:14625556)		 MGI PMID:14625556 PMID:15201223 PMID:15917450 NCBI chrNW_004624884:1,830,645...1,840,213 JBrowse link
G Pax6 paired box 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15514979)
(PMID:15758185)
(PMID:15548580)		 Ensembl
MGI		 PMID:15514979 PMID:15548580 PMID:15758185 GO_REF:0000107 NCBI chrNW_004624766:20,536,581...20,554,589
Ensembl chrNW_004624766:20,536,233...20,554,759 		JBrowse link
G Pcdh9 protocadherin 9 ISO RGD PMID:17614211 RGD:2316761 NCBI chrNW_004624748:27,604,426...28,543,256
Ensembl chrNW_004624748:27,606,224...28,543,269 		JBrowse link
G Pou3f1 POU class 3 homeobox 1 acts_upstream_of_or_within ISO (PMID:19527706) MGI PMID:19527706 NCBI chrNW_004624764:20,682,883...20,685,774
Ensembl chrNW_004624764:20,684,402...20,685,757 		JBrowse link
G Ppargc1a PPARG coactivator 1 alpha ISO RGD PMID:17335037 RGD:10059646 NCBI chrNW_004624755:7,826,219...8,460,746
Ensembl chrNW_004624755:8,375,596...8,465,297 		JBrowse link
G Prkg1 protein kinase cGMP-dependent 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16154207) Ensembl
MGI		 PMID:16154207 GO_REF:0000107 NCBI chrNW_004624791:11,334,146...12,656,480
Ensembl chrNW_004624791:11,338,510...12,654,812 		JBrowse link
G Psen1 presenilin 1 acts_upstream_of_or_within ISO (PMID:15148382) MGI PMID:15148382 NCBI chrNW_004624734:28,200,358...28,272,684
Ensembl chrNW_004624734:28,200,140...28,272,743 		JBrowse link
G Psen2 presenilin 2 acts_upstream_of_or_within ISO (PMID:15148382) MGI PMID:15148382 NCBI chrNW_004624771:17,183,538...17,205,460
Ensembl chrNW_004624771:17,183,447...17,224,188 		JBrowse link
G Rac1 Rac family small GTPase 1 involved_in ISO (MGI:3827084|PMID:19007770) UniProt PMID:19007770 MGI:3827084 NCBI chrNW_004624740:30,912,841...30,933,882
Ensembl chrNW_004624740:30,911,598...30,934,025 		JBrowse link
G Reln reelin acts_upstream_of_or_within ISO (PMID:17694053) MGI PMID:17694053 NCBI chrNW_004624739:25,472,626...25,918,064
Ensembl chrNW_004624739:25,472,561...25,918,167 		JBrowse link
G Setd2 SET domain containing 2, histone lysine methyltransferase acts_upstream_of_or_within ISO (PMID:20133625) MGI PMID:20133625 NCBI chrNW_004624730:74,187,981...74,277,857
Ensembl chrNW_004624730:74,187,995...74,277,200 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO (PMID:16020517) MGI PMID:16020517 NCBI chrNW_004624800:2,202,986...2,215,309
Ensembl chrNW_004624800:2,203,393...2,212,068 		JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 acts_upstream_of_or_within ISO (PMID:16330018) MGI PMID:16330018 NCBI chrNW_004624828:2,893,075...2,985,968
Ensembl chrNW_004624828:2,893,096...2,985,968 		JBrowse link
G Sox1 SRY-box transcription factor 1 acts_upstream_of_or_within ISO (PMID:15882093) MGI PMID:15882093 NCBI chrNW_004624793:1,341,643...1,648,168
Ensembl chrNW_004624793:1,370,243...1,371,358 		JBrowse link
G Sox2 SRY-box transcription factor 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624730:59,570,879...59,573,001
Ensembl chrNW_004624730:59,570,915...59,571,871 		JBrowse link
G Sox3 SRY-box transcription factor 3 acts_upstream_of_or_within ISO (PMID:14981518) MGI PMID:14981518 NCBI chrNW_004624808:6,167,512...6,169,603
Ensembl chrNW_004624808:6,167,512...6,168,891 		JBrowse link
G Src SRC proto-oncogene, non-receptor tyrosine kinase acts_upstream_of_or_within ISO (PMID:16162939) MGI PMID:16162939 NCBI chrNW_004624842:2,212,561...2,260,514
Ensembl chrNW_004624842:2,211,020...2,230,132 		JBrowse link
G Srf serum response factor acts_upstream_of_or_within ISO (PMID:20534669) MGI PMID:20534669 NCBI chrNW_004624754:16,371,995...16,381,287 JBrowse link
G Sstr1 somatostatin receptor 1 ISO RGD PMID:10805921 RGD:2325003 NCBI chrNW_004624813:7,538,104...7,543,836
Ensembl chrNW_004624813:7,539,304...7,540,479 		JBrowse link
G Sstr2 somatostatin receptor 2 ISO RGD PMID:10805921 RGD:2325003 NCBI chrNW_004624801:3,198,137...3,205,936
Ensembl chrNW_004624801:3,198,204...3,206,481 		JBrowse link
G Sstr3 somatostatin receptor 3 ISO RGD PMID:10805921 RGD:2325003 NCBI chrNW_004624752:10,623,360...10,626,759
Ensembl chrNW_004624752:10,619,078...10,626,754 		JBrowse link
G Stil STIL centriolar assembly protein acts_upstream_of_or_within ISO (PMID:10385121) MGI PMID:10385121 NCBI chrNW_004624859:5,510,442...5,572,122
Ensembl chrNW_004624859:5,510,384...5,572,228 		JBrowse link
G Top2b DNA topoisomerase II beta acts_upstream_of_or_within ISO (PMID:12773624) MGI PMID:12773624 NCBI chrNW_004624788:3,493,188...3,590,138 JBrowse link
G Tp73 tumor protein p73 acts_upstream_of_or_within ISO (PMID:15525772) MGI PMID:15525772 NCBI chrNW_004624818:6,775,588...6,817,187
Ensembl chrNW_004624818:6,775,599...6,809,289 		JBrowse link
G Ttbk2 tau tubulin kinase 2 acts_upstream_of_or_within ISO (PMID:23141541) MGI PMID:23141541 NCBI chrNW_004624804:9,841,401...10,002,592
Ensembl chrNW_004624804:9,848,512...10,002,693 		JBrowse link
G Ttc21b tetratricopeptide repeat domain 21B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:28291836) Ensembl
MGI		 PMID:28291836 GO_REF:0000107 NCBI chrNW_004624787:3,685,700...3,745,018
Ensembl chrNW_004624787:3,686,088...3,744,895 		JBrowse link
G Twsg1 twisted gastrulation BMP signaling modulator 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14681194)
(PMID:15013800)		 Ensembl
MGI		 PMID:14681194 PMID:15013800 GO_REF:0000107 NCBI chrNW_004624770:18,047,790...18,081,559
Ensembl chrNW_004624770:18,047,810...18,081,761 		JBrowse link
G Tyrobp transmembrane immune signaling adaptor TYROBP involved_in ISO (MGI:3812233|PMID:18685038) ARUK-UCL PMID:18685038 MGI:3812233 NCBI chrNW_004624794:10,183,934...10,187,180
Ensembl chrNW_004624794:10,183,515...10,187,244 		JBrowse link
G Vax2 ventral anterior homeobox 2 involved_in ISO (MGI:5289759|PMID:21856776) UniProt PMID:21856776 MGI:5289759 NCBI chrNW_004624762:2,480,474...2,508,367
Ensembl chrNW_004624762:2,481,372...2,508,306 		JBrowse link
G Zeb1 zinc finger E-box binding homeobox 1 ISO RGD PMID:11731009 RGD:2325879 NCBI chrNW_004624805:3,964,448...4,044,546
Ensembl chrNW_004624805:3,964,450...4,042,527 		JBrowse link
G Zic1 Zic family member 1 involved_in ISO (PMID:17507568) MGI PMID:17507568 NCBI chrNW_004624730:24,440,717...24,444,663
Ensembl chrNW_004624730:24,440,192...24,448,421 		JBrowse link
G Zic3 Zic family member 3 involved_in ISO (PMID:17507568) MGI PMID:17507568 NCBI chrNW_004624808:9,201,025...9,212,192
Ensembl chrNW_004624808:9,200,952...9,212,093 		JBrowse link
G Zic5 Zic family member 5 acts_upstream_of_or_within ISO (PMID:15736266) MGI PMID:15736266 NCBI chrNW_004624793:11,171,431...11,186,415
Ensembl chrNW_004624793:11,176,946...11,189,003 		JBrowse link
adenohypophysis development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Drd2 dopamine receptor D2 acts_upstream_of_or_within ISO (PMID:9140068) MGI PMID:9140068 NCBI chrNW_004624784:8,828,589...8,906,617
Ensembl chrNW_004624784:8,827,006...8,865,529 		JBrowse link
G Ghrh growth hormone releasing hormone acts_upstream_of_or_within ISO (PMID:15985453) MGI PMID:15985453 NCBI chrNW_004625146:5,484...8,763
Ensembl chrNW_004625146:6,381...13,318 		JBrowse link
G Ghrhr growth hormone releasing hormone receptor acts_upstream_of_or_within ISO (PMID:1270792), (PMID:1329576), (PMID:1504465) MGI PMID:1270792 PMID:1329576 PMID:1504465 NCBI chrNW_004624783:200,935...214,453
Ensembl chrNW_004624783:200,940...214,373 		JBrowse link
G Gsx1 GS homeobox 1 acts_upstream_of_or_within ISO (PMID:8631293) MGI PMID:8631293 NCBI chrNW_004624776:10,704,726...10,707,108
Ensembl chrNW_004624776:10,705,843...10,707,093 		JBrowse link
G Hes1 hes family bHLH transcription factor 1 acts_upstream_of_or_within ISO (PMID:18996108) MGI PMID:18996108 NCBI chrNW_004624730:63,563,848...63,566,303
Ensembl chrNW_004624730:63,563,754...63,566,781 		JBrowse link
G Pou1f1 POU class 1 homeobox 1 ISO RGD PMID:16216912 RGD:1601440 NCBI chrNW_004624789:3,589,863...3,605,655
Ensembl chrNW_004624789:3,592,214...3,605,537 		JBrowse link
G Prop1 PROP paired-like homeobox 1 acts_upstream_of_or_within ISO (PMID:18996108) MGI PMID:18996108 NCBI chrNW_004624733:41,852,638...41,856,493
Ensembl chrNW_004624733:41,850,474...41,856,459 		JBrowse link
G Slc6a3 solute carrier family 6 member 3 acts_upstream_of_or_within ISO (PMID:9247269) MGI PMID:9247269 NCBI chrNW_004624751:694,165...720,287
Ensembl chrNW_004624751:694,099...719,465 		JBrowse link
G Sox2 SRY-box transcription factor 2 acts_upstream_of_or_within ISO (PMID:16932809) RGD
MGI		 PMID:16932809 PMID:21815952 RGD:8661681 NCBI chrNW_004624730:59,570,879...59,573,001
Ensembl chrNW_004624730:59,570,915...59,571,871 		JBrowse link
adenohypophysis morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Duox2 dual oxidase 2 acts_upstream_of_or_within ISO (PMID:17440044) MGI PMID:17440044 NCBI chrNW_004624731:14,121,855...14,139,344
Ensembl chrNW_004624731:14,122,608...14,138,121 		JBrowse link
ammon gyrus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrp8 LDL receptor related protein 8 involved_in ISO (MGI:3821675|PMID:18778775) CACAO PMID:18778775 MGI:3821675 NCBI chrNW_004624934:1,145,982...1,220,177
Ensembl chrNW_004624934:1,146,000...1,215,922 		JBrowse link
amygdala development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Esr2 estrogen receptor 2 ISO RGD PMID:22791648 RGD:8694158 NCBI chrNW_004624734:36,742,913...36,862,993
Ensembl chrNW_004624734:36,759,104...36,825,295 		JBrowse link
G Nf1 neurofibromin 1 acts_upstream_of_or_within ISO (PMID:25242307) MGI PMID:25242307 NCBI chrNW_004624875:3,636,762...3,959,991
Ensembl chrNW_004624875:3,636,924...3,956,576 		JBrowse link
G Nr2e1 nuclear receptor subfamily 2 group E member 1 acts_upstream_of_or_within ISO (PMID:12527005) MGI PMID:12527005 NCBI chrNW_004624780:14,098,144...14,119,791
Ensembl chrNW_004624780:14,098,360...14,119,772 		JBrowse link
G Pak1 p21 (RAC1) activated kinase 1 acts_upstream_of_or_within ISO (PMID:25242307) MGI PMID:25242307 NCBI chrNW_004624863:442,465...609,159
Ensembl chrNW_004624863:439,541...525,918 		JBrowse link
G Tbr1 T-box brain transcription factor 1 acts_upstream_of_or_within ISO (PMID:24441682) MGI PMID:24441682 NCBI chrNW_004624732:4,043,867...4,052,621
Ensembl chrNW_004624732:4,043,867...4,052,551 		JBrowse link
G Uba6 ubiquitin like modifier activating enzyme 6 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:23499007) MGI
Ensembl		 PMID:23499007 GO_REF:0000107 NCBI chrNW_004624761:1,262,172...1,351,606
Ensembl chrNW_004624761:1,262,345...1,349,964 		JBrowse link
anterior commissure morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bhlhe22 basic helix-loop-helix family member e22 acts_upstream_of_or_within ISO (PMID:22284184) MGI PMID:22284184 NCBI chrNW_004624744:27,008,292...27,009,602
Ensembl chrNW_004624744:27,008,471...27,009,583 		JBrowse link
G Draxin dorsal inhibitory axon guidance protein involved_in ISO (MGI:5467661|PMID:23206892) UniProt PMID:23206892 MGI:5467661 NCBI chrNW_004624818:1,253,968...1,274,418
Ensembl chrNW_004624818:1,256,169...1,263,904 		JBrowse link
G Fbxo45 F-box protein 45 acts_upstream_of_or_within ISO (PMID:19398581) MGI PMID:19398581 NCBI chrNW_004624730:61,667,177...61,684,162 JBrowse link
G Nfib nuclear factor I B involved_in ISO (MGI:4453290|PMID:19961580) UniProt PMID:19961580 MGI:4453290 NCBI chrNW_004624736:18,372,418...18,586,390
Ensembl chrNW_004624736:18,377,624...18,586,424 		JBrowse link
G Nr2e1 nuclear receptor subfamily 2 group E member 1 acts_upstream_of_or_within ISO (PMID:11997145) MGI PMID:11997145 NCBI chrNW_004624780:14,098,144...14,119,791
Ensembl chrNW_004624780:14,098,360...14,119,772 		JBrowse link
G Plxna4 plexin A4 acts_upstream_of_or_within ISO (PMID:15814794) MGI PMID:15814794 NCBI chrNW_004624783:3,831,320...4,292,594
Ensembl chrNW_004624783:3,658,835...4,285,638 		JBrowse link
G Tsku tsukushi, small leucine rich proteoglycan involved_in
acts_upstream_of_or_within		 ISO (MGI:5467661|PMID:23206892)
(PMID:21055390)		 UniProt
MGI		 PMID:21055390 PMID:23206892 MGI:5467661 NCBI chrNW_004624817:364,543...379,742
Ensembl chrNW_004624817:366,101...373,034 		JBrowse link
G Wdr47 WD repeat domain 47 acts_upstream_of_or_within ISO (PMID:29078390) MGI PMID:29078390 NCBI chrNW_004624772:4,749,748...4,821,490
Ensembl chrNW_004624772:4,750,931...4,806,717 		JBrowse link
Cajal-Retzius cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hes1 hes family bHLH transcription factor 1 acts_upstream_of ISO (PMID:18579678) MGI PMID:18579678 NCBI chrNW_004624730:63,563,848...63,566,303
Ensembl chrNW_004624730:63,563,754...63,566,781 		JBrowse link
G Neurog2 neurogenin 2 acts_upstream_of ISO (PMID:18579678) MGI PMID:18579678 NCBI chrNW_004624838:6,324,036...6,325,511 JBrowse link
G Psen1 presenilin 1 acts_upstream_of_or_within ISO (PMID:15548218) MGI PMID:15548218 NCBI chrNW_004624734:28,200,358...28,272,684
Ensembl chrNW_004624734:28,200,140...28,272,743 		JBrowse link
caudate nucleus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxp2 forkhead box P2 involved_in ISO (PMID:11872605) UniProt PMID:11872605 NCBI chrNW_004624827:4,813,203...5,086,326
Ensembl chrNW_004624827:4,817,092...5,086,488 		JBrowse link
cell migration in diencephalon term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxb1 forkhead box B1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624781:12,182,728...12,185,228
Ensembl chrNW_004624781:12,183,444...12,185,185 		JBrowse link
cell motility involved in cerebral cortex radial glia guided migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmerb1 bMERB domain containing 1 acts_upstream_of ISO (PMID:25099998) MGI PMID:25099998 NCBI chrNW_004624782:75,141...184,590
Ensembl chrNW_004624782:75,066...184,590 		JBrowse link
G Dab2ip DAB2 interacting protein involved_in ISO (MGI:5463669|PMID:23056358) UniProt PMID:23056358 MGI:5463669 NCBI chrNW_004624760:13,472,500...13,658,070
Ensembl chrNW_004624760:13,472,672...13,657,930 		JBrowse link
cell proliferation in forebrain term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arx aristaless related homeobox acts_upstream_of_or_within ISO (PMID:15677725) MGI PMID:15677725 NCBI chrNW_004624897:1,279,138...1,303,210 JBrowse link
G Disc1 DISC1 scaffold protein involved_in ISO (MGI:4821185|PMID:20624590) DFLAT PMID:20624590 MGI:4821185 NCBI chrNW_004624775:17,820,590...18,165,640
Ensembl chrNW_004624775:17,831,272...18,165,668 		JBrowse link
G Dixdc1 DIX domain containing 1 involved_in ISO (MGI:4821185|PMID:20624590) DFLAT PMID:20624590 MGI:4821185 NCBI chrNW_004624784:7,093,457...7,178,448
Ensembl chrNW_004624784:7,094,736...7,175,072 		JBrowse link
G Emx2 empty spiracles homeobox 2 acts_upstream_of_or_within ISO (PMID:10729342) MGI PMID:10729342 NCBI chrNW_004624737:29,103,378...29,110,356
Ensembl chrNW_004624737:29,103,279...29,110,344 		JBrowse link
G Fabp7 fatty acid binding protein 7 acts_upstream_of_or_within ISO (PMID:18001149) MGI PMID:18001149 NCBI chrNW_004624798:8,426,819...8,430,949
Ensembl chrNW_004624798:8,426,825...8,430,939 		JBrowse link
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO (PMID:16613831) MGI PMID:16613831 NCBI chrNW_004624831:1,251,991...1,259,247
Ensembl chrNW_004624831:1,253,044...1,257,741 		JBrowse link
G Hmga2 high mobility group AT-hook 2 acts_upstream_of_or_within ISO (PMID:18957199) MGI PMID:18957199 NCBI chrNW_004624802:2,337,344...2,468,757
Ensembl chrNW_004624802:2,337,464...2,467,990 		JBrowse link
G Kif14 kinesin family member 14 involved_in ISO (MGI:5485315|PMID:23308235) UniProt PMID:23308235 MGI:5485315 NCBI chrNW_004624807:10,093,518...10,144,484
Ensembl chrNW_004624807:10,092,934...10,143,399 		JBrowse link
G Lhx5 LIM homeobox 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10325223) Ensembl
MGI		 PMID:10325223 GO_REF:0000107 NCBI chrNW_004624747:19,088,372...19,097,406
Ensembl chrNW_004624747:19,088,311...19,097,080 		JBrowse link
G Ncor2 nuclear receptor corepressor 2 acts_upstream_of_or_within ISO (PMID:17928865) MGI PMID:17928865 NCBI chrNW_004624747:23,777,645...23,887,804
Ensembl chrNW_004624747:23,777,325...23,865,804 		JBrowse link
G Nfib nuclear factor I B involved_in ISO (PMID:27965439) MGI PMID:27965439 NCBI chrNW_004624736:18,372,418...18,586,390
Ensembl chrNW_004624736:18,377,624...18,586,424 		JBrowse link
G Nfix nuclear factor I X involved_in ISO (PMID:27965439) MGI PMID:27965439 NCBI chrNW_004624901:551,277...645,435
Ensembl chrNW_004624901:550,931...646,417 		JBrowse link
G Ngf nerve growth factor ISO RGD PMID:29409115 RGD:402463967 NCBI chrNW_004624772:11,009,765...11,070,050
Ensembl chrNW_004624772:11,010,845...11,070,017 		JBrowse link
G Rrm1 ribonucleotide reductase catalytic subunit M1 ISO RGD PMID:12834878 RGD:5133694 NCBI chrNW_004624817:5,523,648...5,568,997
Ensembl chrNW_004624817:5,523,665...5,568,994 		JBrowse link
G Six3 SIX homeobox 3 involved_in ISO (MGI:3813369|PMID:18694563) UniProt PMID:18694563 MGI:3813369 NCBI chrNW_004624738:26,379,172...26,391,669
Ensembl chrNW_004624738:26,380,088...26,394,252 		JBrowse link
G Wnt3a Wnt family member 3A involved_in ISO (MGI:2667422|PMID:12843296) BHF-UCL PMID:12843296 MGI:2667422 NCBI chrNW_004624937:816,752...845,866
Ensembl chrNW_004624937:816,759...845,458 		JBrowse link
G Wnt7a Wnt family member 7A involved_in ISO (PMID:12843296) BHF-UCL PMID:12843296 NCBI chrNW_004624796:12,431,310...12,472,303
Ensembl chrNW_004624796:12,431,959...12,472,303 		JBrowse link
G Wnt7b Wnt family member 7B involved_in ISO (MGI:2667422|PMID:12843296) BHF-UCL PMID:12843296 MGI:2667422 NCBI chrNW_004624752:3,818,073...3,856,602
Ensembl chrNW_004624752:3,818,025...3,857,027 		JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 acts_upstream_of_or_within ISO (PMID:17644613) MGI PMID:17644613 NCBI chrNW_004624732:44,097,348...44,226,701
Ensembl chrNW_004624732:44,101,613...44,139,997 		JBrowse link
cell-cell adhesion involved in neuronal-glial interactions involved in cerebral cortex radial glia guided migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dab1 DAB adaptor protein 1 acts_upstream_of_or_within ISO (PMID:15091337) MGI PMID:15091337 NCBI chrNW_004624862:2,053,637...3,159,712
Ensembl chrNW_004624862:2,892,851...3,144,194 		JBrowse link
cerebral cortex cell migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dab1 DAB adaptor protein 1 acts_upstream_of_or_within ISO (PMID:15249135) MGI PMID:15249135 NCBI chrNW_004624862:2,053,637...3,159,712
Ensembl chrNW_004624862:2,892,851...3,144,194 		JBrowse link
G Dixdc1 DIX domain containing 1 involved_in ISO (MGI:4821185|PMID:20624590) DFLAT PMID:20624590 MGI:4821185 NCBI chrNW_004624784:7,093,457...7,178,448
Ensembl chrNW_004624784:7,094,736...7,175,072 		JBrowse link
G Efhc1 EF-hand domain containing 1 involved_in ISO (PMID:22926142) UniProt PMID:22926142 NCBI chrNW_004624855:3,611,016...3,677,813
Ensembl chrNW_004624855:3,611,176...3,677,675 		JBrowse link
G Egfr epidermal growth factor receptor acts_upstream_of_or_within ISO (PMID:7618084) MGI PMID:7618084 NCBI chrNW_004624740:584,133...713,205
Ensembl chrNW_004624740:589,606...713,271 		JBrowse link
G Fgf13 fibroblast growth factor 13 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624808:7,577,422...8,091,216
Ensembl chrNW_004624808:7,578,286...8,091,811 		JBrowse link
G Htr6 5-hydroxytryptamine receptor 6 involved_in ISO (MGI:5607347|PMID:25078650) UniProt PMID:25078650 MGI:5607347 NCBI chrNW_004624764:4,778,563...4,791,505
Ensembl chrNW_004624764:4,778,657...4,791,458 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:16920270) MGI PMID:16920270 NCBI chrNW_004624752:25,605,444...25,756,573
Ensembl chrNW_004624752:25,605,302...25,751,893 		JBrowse link
G Nkx2-1 NK2 homeobox 1 acts_upstream_of_or_within ISO (PMID:18786357) MGI PMID:18786357 NCBI chrNW_004624838:300,902...304,944
Ensembl chrNW_004624838:300,458...305,517 		JBrowse link
G Pex13 peroxisomal biogenesis factor 13 acts_upstream_of_or_within ISO (PMID:12897163) MGI PMID:12897163 NCBI chrNW_004624833:914,621...940,661
Ensembl chrNW_004624833:913,337...940,611 		JBrowse link
G Pex5 peroxisomal biogenesis factor 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10653000), (PMID:9288097) Ensembl
MGI		 PMID:9288097 PMID:10653000 GO_REF:0000107 NCBI chrNW_004624860:3,771,949...3,790,982
Ensembl chrNW_004624860:3,771,963...3,790,985 		JBrowse link
G Psen1 presenilin 1 acts_upstream_of_or_within ISO (PMID:16079160) MGI PMID:16079160 NCBI chrNW_004624734:28,200,358...28,272,684
Ensembl chrNW_004624734:28,200,140...28,272,743 		JBrowse link
G Rhoa ras homolog family member A acts_upstream_of_or_within ISO (PMID:22405202) MGI PMID:22405202 NCBI chrNW_004624730:3,316,122...3,361,820 JBrowse link
cerebral cortex development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Afdn afadin, adherens junction formation factor acts_upstream_of_or_within ISO (PMID:25100583) MGI PMID:25100583 NCBI chrNW_004624785:11,549,805...11,698,029
Ensembl chrNW_004624785:11,551,687...11,697,921 		JBrowse link
G Ahsg alpha 2-HS glycoprotein ISO RGD PMID:2423927 RGD:1626077 NCBI chrNW_004624730:70,149,461...70,156,058
Ensembl chrNW_004624730:70,149,850...70,156,039 		JBrowse link
G Akirin2 akirin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624799:6,620,102...6,644,286
Ensembl chrNW_004624799:6,625,549...6,644,286 		JBrowse link
G Ascl1 achaete-scute family bHLH transcription factor 1 acts_upstream_of_or_within ISO (PMID:17678855) MGI PMID:17678855 NCBI chrNW_004624750:5,487,046...5,489,399
Ensembl chrNW_004624750:5,487,053...5,493,339 		JBrowse link
G Aspm assembly factor for spindle microtubules acts_upstream_of_or_within ISO (PMID:24220505) MGI PMID:24220505 NCBI chrNW_004624798:3,164,145...3,223,810
Ensembl chrNW_004624798:3,165,393...3,225,181 		JBrowse link
G Atg7 autophagy related 7 acts_upstream_of_or_within ISO (PMID:16625205) MGI PMID:16625205 NCBI chrNW_004624943:231,978...480,933
Ensembl chrNW_004624943:232,618...481,290 		JBrowse link
G Atic 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase ISO RGD PMID:7057182 RGD:2301991 NCBI chrNW_004624765:782,703...809,461
Ensembl chrNW_004624765:782,701...809,448 		JBrowse link
G Atoh1 atonal bHLH transcription factor 1 acts_upstream_of_or_within ISO (PMID:16325379) MGI PMID:16325379 NCBI chrNW_004624757:21,517,650...21,519,543
Ensembl chrNW_004624757:21,517,809...21,518,864 		JBrowse link
G Atp1a3 ATPase Na+/K+ transporting subunit alpha 3 acts_upstream_of_or_within ISO (PMID:23527305) RGD
MGI		 PMID:19362129 PMID:23527305 RGD:11576282 NCBI chrNW_004624907:715,109...736,040
Ensembl chrNW_004624907:715,094...736,432 		JBrowse link
G Bad BCL2 associated agonist of cell death ISO RGD PMID:9813151 RGD:2315711 NCBI chrNW_004624767:22,025,721...22,037,283
Ensembl chrNW_004624767:22,026,133...22,037,277 		JBrowse link
G Bax BCL2 associated X, apoptosis regulator acts_upstream_of_or_within ISO (PMID:15342910) RGD
MGI		 PMID:9813151 PMID:15342910 RGD:2315711 NCBI chrNW_004624832:5,050,222...5,068,565
Ensembl chrNW_004624832:5,050,222...5,055,506 		JBrowse link
G Bbs1 Bardet-Biedl syndrome 1 acts_upstream_of_or_within ISO (PMID:18032602) MGI PMID:18032602 NCBI chrNW_004624767:19,875,597...19,893,652
Ensembl chrNW_004624767:19,875,535...19,893,694 		JBrowse link
G Bbs2 Bardet-Biedl syndrome 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:18032602) MGI
Ensembl		 PMID:18032602 GO_REF:0000107 NCBI chrNW_004624757:55,861...88,703
Ensembl chrNW_004624757:55,811...88,562 		JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 acts_upstream_of_or_within ISO (PMID:18032602) MGI PMID:18032602 NCBI chrNW_004624781:1,502,069...1,553,101
Ensembl chrNW_004624781:1,503,816...1,538,755 		JBrowse link
G Bcl2 BCL2 apoptosis regulator ISO RGD PMID:9813151 RGD:2315711 NCBI chrNW_004624792:8,854,345...9,032,727
Ensembl chrNW_004624792:8,859,522...9,031,344 		JBrowse link
G Bcl2a1 BCL2 related protein A1 ISO RGD PMID:9813151 RGD:2315711 NCBI chrNW_004624941:907,382...932,751
Ensembl chrNW_004624941:907,119...933,356 		JBrowse link
G Bcl2l1 BCL2 like 1 ISO RGD PMID:9813151 RGD:2315711 NCBI chrNW_004624741:788,445...838,513
Ensembl chrNW_004624741:789,355...839,507 		JBrowse link
G Bnip3 BCL2 interacting protein 3 ISO RGD PMID:16765336 RGD:11561980 NCBI chrNW_004624737:14,848,355...14,863,731
Ensembl chrNW_004624737:14,848,350...14,862,965 		JBrowse link
G Btbd3 BTB domain containing 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624741:12,849,238...12,879,844 JBrowse link
G Cacna1c calcium voltage-gated channel subunit alpha1 C ISO RGD PMID:22473424 RGD:10411906 NCBI chrNW_004624735:10,201,030...10,927,349
Ensembl chrNW_004624735:10,201,526...10,432,896 		JBrowse link
G Cask calcium/calmodulin dependent serine protein kinase ISO RGD PMID:10749215 RGD:11576295 NCBI chrNW_004624762:13,723,347...14,106,844
Ensembl chrNW_004624762:13,722,691...14,106,844 		JBrowse link
G Ccdc85c coiled-coil domain containing 85C involved_in ISO (MGI:5305566|PMID:22056358) UniProt PMID:22056358 MGI:5305566 NCBI chrNW_004624734:4,310,662...4,366,209
Ensembl chrNW_004624734:4,310,607...4,366,209 		JBrowse link
G Cdh2 cadherin 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:25100583) MGI
Ensembl		 PMID:25100583 GO_REF:0000107 NCBI chrNW_004624770:4,333,643...4,540,817
Ensembl chrNW_004624770:4,334,202...4,545,470 		JBrowse link
G Cdk5 cyclin dependent kinase 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9698328) Ensembl
MGI		 PMID:9698328 GO_REF:0000107 NCBI chrNW_004624800:5,562,468...5,566,458
Ensembl chrNW_004624800:5,562,462...5,569,937 		JBrowse link
G Cdon cell adhesion associated, oncogene regulated acts_upstream_of_or_within ISO (PMID:16648472) MGI PMID:16648472 NCBI chrNW_004624812:107,632...203,791
Ensembl chrNW_004624812:109,405...203,519 		JBrowse link
G Celf1 CUGBP Elav-like family member 1 acts_upstream_of_or_within ISO (PMID:32245946) MGI PMID:32245946 NCBI chrNW_004624767:1,263,231...1,344,896 JBrowse link
G Cep120 centrosomal protein 120 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17920017) Ensembl
MGI		 PMID:17920017 GO_REF:0000107 NCBI chrNW_004624774:18,587,363...18,654,726
Ensembl chrNW_004624774:18,587,485...18,654,897 		JBrowse link
G Cntnap2 contactin associated protein 2 involved_in ISO (PMID:18179893), (PMID:18987363) BHF-UCL PMID:18179893 PMID:18987363 NCBI chrNW_004624800:7,182,588...9,280,407
Ensembl chrNW_004624800:7,181,020...9,279,678 		JBrowse link
G Col3a1 collagen type III alpha 1 chain involved_in ISO (MGI:5288127|PMID:21768377) UniProt PMID:21768377 MGI:5288127 NCBI chrNW_004624899:1,192,078...1,230,528
Ensembl chrNW_004624899:1,192,360...1,230,404 		JBrowse link
G Crk CRK proto-oncogene, adaptor protein acts_upstream_of_or_within ISO (PMID:19074029) MGI PMID:19074029 NCBI chrNW_004624786:4,153,783...4,177,611
Ensembl chrNW_004624786:4,153,889...4,177,716 		JBrowse link
G Crkl CRK like proto-oncogene, adaptor protein acts_upstream_of_or_within ISO (PMID:19074029) MGI PMID:19074029 NCBI chrNW_004624945:734,532...767,184
Ensembl chrNW_004624945:734,532...767,168 		JBrowse link
G Crnkl1 crooked neck pre-mRNA splicing factor 1 ISO RGD PMID:12801913 RGD:634609 NCBI chrNW_004624741:20,565,686...20,581,708
Ensembl chrNW_004624741:20,564,474...20,581,716 		JBrowse link
G Csnk2a1 casein kinase 2 alpha 1 ISO RGD PMID:7735332 RGD:11565823 NCBI chrNW_004624741:1,566,380...1,635,365 JBrowse link
G Csnk2a2 casein kinase 2 alpha 2 ISO RGD PMID:7735332 RGD:11565823 NCBI chrNW_004624746:28,012,543...28,064,610
Ensembl chrNW_004624746:28,012,556...28,060,413 		JBrowse link
G Dab1 DAB adaptor protein 1 ISO RGD PMID:20368265 RGD:2324624 NCBI chrNW_004624862:2,053,637...3,159,712
Ensembl chrNW_004624862:2,892,851...3,144,194 		JBrowse link
G Dcc DCC netrin 1 receptor ISO RGD PMID:22473424 RGD:10411906 NCBI chrNW_004624778:15,979,350...17,225,263
Ensembl chrNW_004624778:15,979,467...17,222,039 		JBrowse link
G Dicer1 dicer 1, ribonuclease III acts_upstream_of_or_within ISO (PMID:18997113) MGI PMID:18997113 NCBI chrNW_004624734:7,604,049...7,681,481
Ensembl chrNW_004624734:7,608,273...7,651,819 		JBrowse link
G Dlg1 discs large MAGUK scaffold protein 1 ISO RGD PMID:14597197 RGD:152975667 NCBI chrNW_004624730:62,001,547...62,223,098
Ensembl chrNW_004624730:62,002,280...62,223,319 		JBrowse link
G Dlg4 discs large MAGUK scaffold protein 4 ISO RGD PMID:14597197 RGD:152975667 NCBI chrNW_004624786:9,811,201...9,835,660
Ensembl chrNW_004624786:9,811,780...9,837,100 		JBrowse link
G Dmd dystrophin ISO RGD PMID:1454857 RGD:12880362 NCBI chrNW_004624762:22,306,962...24,846,427
Ensembl chrNW_004624762:22,746,729...24,847,938 		JBrowse link
G Emx1 empty spiracles homeobox 1 acts_upstream_of_or_within ISO (PMID:12764040)
(PMID:16892058)
(PMID:25100583)		 MGI PMID:12764040 PMID:16892058 PMID:25100583 NCBI chrNW_004624762:685,331...702,040
Ensembl chrNW_004624762:681,308...701,998 		JBrowse link
G Emx2 empty spiracles homeobox 2 acts_upstream_of_or_within ISO (PMID:12764040) MGI PMID:12764040 NCBI chrNW_004624737:29,103,378...29,110,356
Ensembl chrNW_004624737:29,103,279...29,110,344 		JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 ISO RGD PMID:18565716 RGD:13204724 NCBI chrNW_004624753:5,918,005...5,983,480
Ensembl chrNW_004624753:5,917,689...5,982,308 		JBrowse link
G Eomes eomesodermin involved_in ISO (PMID:30186101) MGI PMID:30186101 NCBI chrNW_004624788:5,550,569...5,557,342
Ensembl chrNW_004624788:5,550,445...5,557,321 		JBrowse link
G Fat4 FAT atypical cadherin 4 involved_in ISO (MGI:4821246|PMID:19506035) UniProt PMID:19506035 MGI:4821246 NCBI chrNW_004624777:6,095,166...6,293,142
Ensembl chrNW_004624777:6,095,643...6,292,980 		JBrowse link
G Fktn fukutin acts_upstream_of_or_within ISO (PMID:29360985) MGI PMID:29360985 NCBI chrNW_004624758:5,750,804...5,877,797
Ensembl chrNW_004624758:5,792,514...5,877,709 		JBrowse link
G Flna filamin A ISO RGD PMID:22076441 RGD:11564351 NCBI chrNW_004624946:812,278...836,307
Ensembl chrNW_004624946:812,287...837,273 		JBrowse link
G Fos Fos proto-oncogene, AP-1 transcription factor subunit ISO RGD PMID:32385110 RGD:405649740 NCBI chrNW_004624734:26,424,053...26,427,431
Ensembl chrNW_004624734:26,423,079...26,427,732 		JBrowse link
G Foxg1 forkhead box G1 acts_upstream_of_or_within ISO (PMID:22726835) MGI PMID:22726835 NCBI chrNW_004624820:3,542,767...3,547,180
Ensembl chrNW_004624820:3,543,687...3,545,147 		JBrowse link
G Foxp2 forkhead box P2 involved_in ISO (PMID:18987363) BHF-UCL PMID:18987363 NCBI chrNW_004624827:4,813,203...5,086,326
Ensembl chrNW_004624827:4,817,092...5,086,488 		JBrowse link
G Gart phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase ISO RGD PMID:7057182 RGD:2301991 NCBI chrNW_004624745:21,735,431...21,763,330
Ensembl chrNW_004624745:21,734,282...21,762,734 		JBrowse link
G Gng12 G protein subunit gamma 12 ISO RGD PMID:9003074 RGD:2314446 NCBI chrNW_004624742:27,652,114...27,721,668
Ensembl chrNW_004624742:27,700,538...27,718,555 		JBrowse link
G Gria1 glutamate ionotropic receptor AMPA type subunit 1 ISO RGD PMID:14597197 RGD:152975667 NCBI chrNW_004624733:35,337,039...35,648,184
Ensembl chrNW_004624733:35,339,683...35,647,349 		JBrowse link
G Gria2 glutamate ionotropic receptor AMPA type subunit 2 ISO RGD PMID:14597197 RGD:152975667 NCBI chrNW_004624848:1,132,939...1,261,110
Ensembl chrNW_004624848:1,135,032...1,261,087 		JBrowse link
G Grin1 glutamate ionotropic receptor NMDA type subunit 1 acts_upstream_of_or_within ISO (PMID:10963597)
(PMID:12657691)		 MGI PMID:10963597 PMID:12657691 NCBI chrNW_004624760:777,208...800,525
Ensembl chrNW_004624760:776,873...801,354 		JBrowse link
G Grin2a glutamate ionotropic receptor NMDA type subunit 2A ISO RGD PMID:19409459 RGD:2325985 NCBI chrNW_004624824:7,128,169...7,513,360
Ensembl chrNW_004624824:7,137,909...7,507,910 		JBrowse link
G Grin2b glutamate ionotropic receptor NMDA type subunit 2B ISO RGD PMID:19409459 RGD:2325985 NCBI chrNW_004624752:24,008,520...24,480,834
Ensembl chrNW_004624752:24,135,487...24,459,288 		JBrowse link
G Grip1 glutamate receptor interacting protein 1 ISO RGD PMID:14597197 RGD:152975667 NCBI chrNW_004624802:1,558,364...1,954,695
Ensembl chrNW_004624802:1,264,833...1,964,202 		JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha acts_upstream_of_or_within ISO (PMID:12972594) MGI PMID:12972594 NCBI chrNW_004624734:39,414,458...39,471,705
Ensembl chrNW_004624734:39,411,824...39,471,705 		JBrowse link
G Hnrnpk heterogeneous nuclear ribonucleoprotein K ISO RGD PMID:18054780 PMID:22102872 RGD:10002783 RGD:10041004 NCBI chrNW_004624809:7,538,568...7,548,272 JBrowse link
G Kcna1 potassium voltage-gated channel subfamily A member 1 ISO RGD PMID:22473424 RGD:10411906 NCBI chrNW_004624860:1,915,108...1,923,071
Ensembl chrNW_004624860:1,915,344...1,923,062 		JBrowse link
G Kcna2 potassium voltage-gated channel subfamily A member 2 ISO RGD PMID:22473424 RGD:10411906 NCBI chrNW_004624772:6,298,113...6,311,614
Ensembl chrNW_004624772:6,305,550...6,309,906 		JBrowse link
G Kcnc4 potassium voltage-gated channel subfamily C member 4 ISO RGD PMID:22473424 RGD:10411906 NCBI chrNW_004624772:5,967,042...6,004,647
Ensembl chrNW_004624772:5,967,071...5,991,484 		JBrowse link
G Kdm1a lysine demethylase 1A ISO RGD PMID:20164337 RGD:9588288 NCBI chrNW_004624764:7,664,550...7,742,494 JBrowse link
G Kif14 kinesin family member 14 involved_in ISO (MGI:5485315|PMID:23308235) UniProt PMID:23308235 MGI:5485315 NCBI chrNW_004624807:10,093,518...10,144,484
Ensembl chrNW_004624807:10,092,934...10,143,399 		JBrowse link
G Kif26a kinesin family member 26A involved_in ISO (PMID:36228617) UniProt PMID:36228617 NCBI chrNW_004624734:884,922...917,393
Ensembl chrNW_004624734:885,863...915,403 		JBrowse link
G Kif5a kinesin family member 5A ISO RGD PMID:9349526 RGD:12792964 NCBI chrNW_004624802:10,375,132...10,409,575
Ensembl chrNW_004624802:10,375,774...10,409,566 		JBrowse link
G Lhx2 LIM homeobox 2 involved_in
acts_upstream_of_or_within		 ISO (MGI:5699500|PMID:26371318), (MGI:5817507|PMID:28053041)
(PMID:19820705)		 UniProt
MGI		 PMID:19820705 PMID:26371318 PMID:28053041 MGI:5699500 MGI:5817507 NCBI chrNW_004624760:10,951,837...10,982,592 JBrowse link
G LOC101701891 histone H2AX ISO RGD PMID:3622934 RGD:8693731 NCBI chrNW_004624784:14,475,813...14,477,269
Ensembl chrNW_004624784:14,476,730...14,477,161 		JBrowse link
G LOC101715424 tubulin alpha-1B chain-like involved_in ISO (PMID:22101068)
(PMID:31386652)		 MGI PMID:22101068 PMID:31386652 NCBI chrNW_004624816:3,001,252...3,006,166 JBrowse link
G Lrp1 LDL receptor related protein 1 ISO RGD PMID:8930375 RGD:10046019 NCBI chrNW_004624802:10,734,907...10,812,888
Ensembl chrNW_004624802:10,734,263...10,812,763 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:16920270) MGI PMID:16920270 NCBI chrNW_004624752:25,605,444...25,756,573
Ensembl chrNW_004624752:25,605,302...25,751,893 		JBrowse link
G Lrp8 LDL receptor related protein 8 ISO RGD PMID:20368265 RGD:2324624 NCBI chrNW_004624934:1,145,982...1,220,177
Ensembl chrNW_004624934:1,146,000...1,215,922 		JBrowse link
G Mcph1 microcephalin 1 acts_upstream_of_or_within ISO (PMID:21947081) MGI PMID:21947081 NCBI chrNW_004624861:4,373,743...4,556,933 JBrowse link
G Mdk midkine involved_in ISO (MGI:2178952|PMID:10096022) DFLAT PMID:10096022 MGI:2178952 NCBI chrNW_004624767:2,171,096...2,173,436
Ensembl chrNW_004624767:2,171,096...2,173,512 		JBrowse link
G Mecp2 methyl-CpG binding protein 2 ISO RGD PMID:14751287 RGD:12743658 NCBI chrNW_004624946:620,581...685,339
Ensembl chrNW_004624946:628,284...685,246 		JBrowse link
G Mgarp mitochondria localized glutamic acid rich protein involved_in ISO (MGI:6760736|PMID:24323429) UniProt PMID:24323429 MGI:6760736 NCBI chrNW_004624777:19,569,376...19,582,226 JBrowse link
G Mkks MKKS centrosomal shuttling protein acts_upstream_of_or_within ISO (PMID:18032602) MGI PMID:18032602 NCBI chrNW_004624741:11,323,935...11,447,669
Ensembl chrNW_004624741:11,425,368...11,435,706 		JBrowse link
G Nars1 asparaginyl-tRNA synthetase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624792:3,109,779...3,128,949
Ensembl chrNW_004624792:3,109,779...3,128,957 		JBrowse link
G Ncoa1 nuclear receptor coactivator 1 ISO RGD PMID:12551846 RGD:5688241 NCBI chrNW_004624738:6,770,745...7,054,616
Ensembl chrNW_004624738:6,943,726...7,054,454 		JBrowse link
G Nde1 nudE neurodevelopment protein 1 involved_in
acts_upstream_of_or_within		 ISO (PMID:21529752)
(PMID:18469343)		 UniProt
MGI		 PMID:18469343 PMID:21529752 NCBI chrNW_004624782:236,715...284,200
Ensembl chrNW_004624782:236,735...268,516 		JBrowse link
G Nefh neurofilament heavy chain ISO RGD PMID:10439464 RGD:9743942 NCBI chrNW_004624747:5,806,576...5,816,158
Ensembl chrNW_004624747:5,806,645...5,815,554 		JBrowse link
G Nefl neurofilament light chain ISO RGD PMID:10439464 RGD:9743942 NCBI chrNW_004624758:20,063,109...20,068,459
Ensembl chrNW_004624758:20,062,685...20,068,609 		JBrowse link
G Nefm neurofilament medium chain ISO RGD PMID:10439464 RGD:9743942 NCBI chrNW_004624758:20,030,450...20,036,105 JBrowse link
G Nf1 neurofibromin 1 acts_upstream_of_or_within ISO (PMID:11297510) MGI PMID:11297510 NCBI chrNW_004624875:3,636,762...3,959,991
Ensembl chrNW_004624875:3,636,924...3,956,576 		JBrowse link
G Nfix nuclear factor I X involved_in ISO (PMID:18477394) MGI PMID:18477394 NCBI chrNW_004624901:551,277...645,435
Ensembl chrNW_004624901:550,931...646,417 		JBrowse link
G Npy neuropeptide Y involved_in ISO (PMID:9067840) DFLAT PMID:9067840 NCBI chrNW_004624739:6,277,704...6,285,454
Ensembl chrNW_004624739:6,277,612...6,285,397 		JBrowse link
G Nr2e1 nuclear receptor subfamily 2 group E member 1 acts_upstream_of_or_within ISO (PMID:12527005), (PMID:15950290)
(PMID:11997145), (PMID:16000615)		 MGI PMID:11997145 PMID:12527005 PMID:15950290 PMID:16000615 NCBI chrNW_004624780:14,098,144...14,119,791
Ensembl chrNW_004624780:14,098,360...14,119,772 		JBrowse link
G Nr4a2 nuclear receptor subfamily 4 group A member 2 ISO RGD PMID:21056632 RGD:124713572 NCBI chrNW_004624732:9,572,160...9,589,624
Ensembl chrNW_004624732:9,581,779...9,589,942 		JBrowse link
G Nsun5 NOP2/Sun RNA methyltransferase 5 involved_in ISO (MGI:6369928|PMID:31462248) UniProt PMID:31462248 MGI:6369928 NCBI chrNW_004624740:14,413,451...14,418,255
Ensembl chrNW_004624740:14,413,489...14,419,340 		JBrowse link
G Ntrk2 neurotrophic receptor tyrosine kinase 2 involved_in ISO (MGI:3776308|PMID:15372074) UniProt PMID:15372074 MGI:3776308 NCBI chrNW_004624809:8,274,736...8,622,287
Ensembl chrNW_004624809:8,276,951...8,616,765 		JBrowse link
G Pafah1b1 platelet activating factor acetylhydrolase 1b regulatory subunit 1 acts_upstream_of_or_within
involved_in		 ISO (PMID:18469343)
(PMID:11344260)
(PMID:9063735)		 MGI
BHF-UCL		 PMID:9063735 PMID:11344260 PMID:18469343 NCBI chrNW_004624786:5,223,890...5,306,033
Ensembl chrNW_004624786:5,224,982...5,302,436 		JBrowse link
G Pals1 protein associated with LIN7 1, MAGUK p55 family member involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624734:33,659,625...33,758,680
Ensembl chrNW_004624734:33,658,975...33,721,548 		JBrowse link
G Pax5 paired box 5 acts_upstream_of_or_within ISO (PMID:23349049) MGI PMID:23349049 NCBI chrNW_004624930:491,220...660,476
Ensembl chrNW_004624930:491,892...667,530 		JBrowse link
G Pax6 paired box 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624766:20,536,581...20,554,589
Ensembl chrNW_004624766:20,536,233...20,554,759 		JBrowse link
G Phactr1 phosphatase and actin regulator 1 involved_in ISO (MGI:6316857|PMID:30256902) UniProt PMID:30256902 MGI:6316857 NCBI chrNW_004624756:12,935,048...13,449,312
Ensembl chrNW_004624756:12,934,212...13,447,326 		JBrowse link
G Plcb1 phospholipase C beta 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624741:9,030,817...9,859,597
Ensembl chrNW_004624741:9,031,204...9,856,556 		JBrowse link
G Ppp1r9b protein phosphatase 1 regulatory subunit 9B ISO RGD PMID:9275233 RGD:625590 NCBI chrNW_004624795:6,124,273...6,137,776
Ensembl chrNW_004624795:6,124,159...6,137,955 		JBrowse link
G Psen1 presenilin 1 acts_upstream_of_or_within ISO (PMID:16079160) MGI PMID:16079160 NCBI chrNW_004624734:28,200,358...28,272,684
Ensembl chrNW_004624734:28,200,140...28,272,743 		JBrowse link
G Ptprs protein tyrosine phosphatase receptor type S acts_upstream_of_or_within ISO (PMID:15842738) MGI PMID:15842738 NCBI chrNW_004624828:4,688,555...4,764,805
Ensembl chrNW_004624828:4,716,249...4,764,614 		JBrowse link
G Reln reelin acts_upstream_of_or_within ISO (PMID:21491433) RGD
MGI		 PMID:10436054 PMID:21491433 RGD:634730 NCBI chrNW_004624739:25,472,626...25,918,064
Ensembl chrNW_004624739:25,472,561...25,918,167 		JBrowse link
G Slc2a1 solute carrier family 2 member 1 ISO RGD PMID:16581179 RGD:12879481 NCBI chrNW_004624892:2,110,310...2,148,023
Ensembl chrNW_004624892:2,117,561...2,148,037 		JBrowse link
G Slc2a3 solute carrier family 2 member 3 ISO RGD PMID:16581179 RGD:12879481 NCBI chrNW_004624860:5,069,246...5,153,435 JBrowse link
G Slc38a2 solute carrier family 38 member 2 ISO RGD PMID:21718781 RGD:9999217 NCBI chrNW_004624816:5,888,447...5,902,009
Ensembl chrNW_004624816:5,888,414...5,902,897 		JBrowse link
G Smo smoothened, frizzled class receptor acts_upstream_of_or_within ISO (PMID:23680462) MGI PMID:23680462 NCBI chrNW_004624783:7,012,385...7,039,302
Ensembl chrNW_004624783:7,011,899...7,039,921 		JBrowse link
G Sox2 SRY-box transcription factor 2 acts_upstream_of_or_within ISO (PMID:15240551) MGI PMID:15240551 NCBI chrNW_004624730:59,570,879...59,573,001
Ensembl chrNW_004624730:59,570,915...59,571,871 		JBrowse link
G Srd5a1 steroid 5 alpha-reductase 1 ISO RGD PMID:8770891 RGD:4892048 NCBI chrNW_004624751:4,309,518...4,335,332
Ensembl chrNW_004624751:4,309,447...4,336,083 		JBrowse link
G Tacc1 transforming acidic coiled-coil containing protein 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:17920017) MGI
TreeGrafter		 PMID:17920017 GO_REF:0000118 NCBI chrNW_004624780:4,769,270...4,886,475
Ensembl chrNW_004624780:4,771,789...4,847,317 		JBrowse link
G Tacc2 transforming acidic coiled-coil containing protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17920017) TreeGrafter
MGI		 PMID:17920017 GO_REF:0000118 NCBI chrNW_004624737:24,472,104...24,685,969
Ensembl chrNW_004624737:24,471,943...24,649,007 		JBrowse link
G Tacc3 transforming acidic coiled-coil containing protein 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17920017) TreeGrafter
MGI		 PMID:17920017 GO_REF:0000118 NCBI chrNW_004624755:25,683,314...25,695,102
Ensembl chrNW_004624755:25,683,137...25,692,504 		JBrowse link
G Tbr1 T-box brain transcription factor 1 involved_in ISO (PMID:30186101) RGD
MGI		 PMID:10749215 PMID:30186101 RGD:11576295 NCBI chrNW_004624732:4,043,867...4,052,621
Ensembl chrNW_004624732:4,043,867...4,052,551 		JBrowse link
G Tfap2c transcription factor AP-2 gamma acts_upstream_of_or_within ISO (PMID:19749747) MGI PMID:19749747 NCBI chrNW_004624741:23,286,526...23,299,318
Ensembl chrNW_004624741:23,290,519...23,298,121 		JBrowse link
G Th tyrosine hydroxylase ISO RGD PMID:21295554 RGD:5128671 NCBI chrNW_004624767:15,003,073...15,010,207
Ensembl chrNW_004624767:15,003,092...15,010,154 		JBrowse link
G Trappc9 trafficking protein particle complex subunit 9 involved_in ISO (PMID:20004763) GO_Central PMID:20004763 NCBI chrNW_004624735:15,898,189...16,661,799
Ensembl chrNW_004624735:15,897,425...16,661,208 		JBrowse link
G Tsc1 TSC complex subunit 1 acts_upstream_of_or_within ISO (PMID:17522300) MGI PMID:17522300 NCBI chrNW_004624760:3,479,028...3,536,612
Ensembl chrNW_004624760:3,498,692...3,532,011 		JBrowse link
G Ulk4 unc-51 like kinase 4 acts_upstream_of_or_within ISO (PMID:34235142) MGI PMID:34235142 NCBI chrNW_004624730:77,495,705...77,876,547
Ensembl chrNW_004624730:77,495,747...77,875,622 		JBrowse link
G Vldlr very low density lipoprotein receptor ISO RGD PMID:20368265 RGD:2324624 NCBI chrNW_004624736:7,280,478...7,316,897
Ensembl chrNW_004624736:7,280,490...7,316,946 		JBrowse link
G Wdr47 WD repeat domain 47 acts_upstream_of_or_within ISO (PMID:29078390) MGI PMID:29078390 NCBI chrNW_004624772:4,749,748...4,821,490
Ensembl chrNW_004624772:4,750,931...4,806,717 		JBrowse link
G Wdr62 WD repeat domain 62 involved_in ISO (PMID:20729831) UniProt PMID:20729831 NCBI chrNW_004624794:10,309,855...10,358,018
Ensembl chrNW_004624794:10,310,129...10,348,686 		JBrowse link
G Xab2 XPA binding protein 2 ISO RGD PMID:12801913 RGD:634609 NCBI chrNW_004624828:704,400...711,963
Ensembl chrNW_004624828:704,300...712,251 		JBrowse link
G Ywhae tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon acts_upstream_of_or_within ISO (PMID:12796778) MGI PMID:12796778 NCBI chrNW_004624786:4,080,650...4,135,200
Ensembl chrNW_004624786:4,080,427...4,135,459 		JBrowse link
G Zbtb18 zinc finger and BTB domain containing 18 acts_upstream_of_or_within ISO (PMID:19409883) MGI PMID:19409883 NCBI chrNW_004624771:15,425,610...15,432,012
Ensembl chrNW_004624771:15,425,604...15,430,542 		JBrowse link
cerebral cortex GABAergic interneuron development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chrna2 cholinergic receptor nicotinic alpha 2 subunit part_of ISO RGD PMID:17046198 RGD:152995358 NCBI chrNW_004624758:22,182,468...22,200,076
Ensembl chrNW_004624758:22,182,951...22,200,063 		JBrowse link
G Rac1 Rac family small GTPase 1 acts_upstream_of_or_within ISO (PMID:23258346) MGI PMID:23258346 NCBI chrNW_004624740:30,912,841...30,933,882
Ensembl chrNW_004624740:30,911,598...30,934,025 		JBrowse link
G Rac3 Rac family small GTPase 3 acts_upstream_of_or_within ISO (PMID:23258346) MGI PMID:23258346 NCBI chrNW_004624801:10,862,490...10,864,856
Ensembl chrNW_004624801:10,862,502...10,864,879 		JBrowse link
cerebral cortex GABAergic interneuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl1 achaete-scute family bHLH transcription factor 1 involved_in ISO (PMID:12050665) UniProt PMID:12050665 NCBI chrNW_004624750:5,487,046...5,489,399
Ensembl chrNW_004624750:5,487,053...5,493,339 		JBrowse link
G Dlx1 distal-less homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15028753) Ensembl
MGI		 PMID:15028753 GO_REF:0000107 NCBI chrNW_004624787:9,514,170...9,519,309
Ensembl chrNW_004624787:9,514,573...9,519,724 		JBrowse link
G Dlx2 distal-less homeobox 2 acts_upstream_of_or_within ISO (PMID:15028753) MGI PMID:15028753 NCBI chrNW_004624787:9,528,942...9,532,252
Ensembl chrNW_004624787:9,530,034...9,533,109 		JBrowse link
G Nkx2-1 NK2 homeobox 1 acts_upstream_of_or_within ISO (PMID:15028753)
(PMID:18786356)		 MGI PMID:15028753 PMID:18786356 NCBI chrNW_004624838:300,902...304,944
Ensembl chrNW_004624838:300,458...305,517 		JBrowse link
cerebral cortex GABAergic interneuron fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dlx1 distal-less homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17678855) Ensembl
MGI		 PMID:17678855 GO_REF:0000107 NCBI chrNW_004624787:9,514,170...9,519,309
Ensembl chrNW_004624787:9,514,573...9,519,724 		JBrowse link
G Dlx2 distal-less homeobox 2 acts_upstream_of_or_within ISO (PMID:17678855) MGI PMID:17678855 NCBI chrNW_004624787:9,528,942...9,532,252
Ensembl chrNW_004624787:9,530,034...9,533,109 		JBrowse link
cerebral cortex GABAergic interneuron migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arx aristaless related homeobox acts_upstream_of_or_within ISO (PMID:17460091) MGI PMID:17460091 NCBI chrNW_004624897:1,279,138...1,303,210 JBrowse link
G Cntn2 contactin 2 acts_upstream_of_or_within ISO (PMID:11714688) MGI PMID:11714688 NCBI chrNW_004624807:6,052,591...6,080,421
Ensembl chrNW_004624807:6,056,339...6,073,588 		JBrowse link
G Drd1 dopamine receptor D1 acts_upstream_of_or_within ISO (PMID:17409246) MGI PMID:17409246 NCBI chrNW_004624733:14,517,540...14,522,173
Ensembl chrNW_004624733:14,518,146...14,520,905 		JBrowse link
G Drd2 dopamine receptor D2 acts_upstream_of_or_within ISO (PMID:17409246) MGI PMID:17409246 NCBI chrNW_004624784:8,828,589...8,906,617
Ensembl chrNW_004624784:8,827,006...8,865,529 		JBrowse link
G Fezf2 FEZ family zinc finger 2 acts_upstream_of_or_within ISO (PMID:21338885) MGI PMID:21338885 NCBI chrNW_004624888:3,462,132...3,467,701
Ensembl chrNW_004624888:3,462,233...3,468,293 		JBrowse link
G Lhx6 LIM homeobox 6 acts_upstream_of_or_within ISO (PMID:17376969) MGI PMID:17376969 NCBI chrNW_004624760:13,066,632...13,092,006
Ensembl chrNW_004624760:13,066,703...13,097,468 		JBrowse link
cerebral cortex neuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chd5 chromodomain helicase DNA binding protein 5 involved_in ISO (MGI:5532595|PMID:23948251) UniProt PMID:23948251 MGI:5532595 NCBI chrNW_004624818:5,203,200...5,251,057
Ensembl chrNW_004624818:5,203,304...5,249,033 		JBrowse link
G CUNH21orf91 chromosome unknown C21orf91 homolog involved_in ISO (MGI:5908509|PMID:27404227) UniProt PMID:27404227 MGI:5908509 NCBI chrNW_004624745:6,180,514...6,213,299
Ensembl chrNW_004624745:6,185,226...6,201,376 		JBrowse link
G Elavl4 ELAV like RNA binding protein 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:32245946) Ensembl
MGI		 PMID:32245946 GO_REF:0000107 NCBI chrNW_004624859:2,875,652...3,023,142
Ensembl chrNW_004624859:2,874,945...3,023,001 		JBrowse link
G Emx1 empty spiracles homeobox 1 acts_upstream_of_or_within ISO (PMID:23178126) MGI PMID:23178126 NCBI chrNW_004624762:685,331...702,040
Ensembl chrNW_004624762:681,308...701,998 		JBrowse link
G Eomes eomesodermin involved_in ISO (MGI:3831469|PMID:18940588) UniProt PMID:18940588 MGI:3831469 NCBI chrNW_004624788:5,550,569...5,557,342
Ensembl chrNW_004624788:5,550,445...5,557,321 		JBrowse link
G Fezf2 FEZ family zinc finger 2 acts_upstream_of_or_within ISO (PMID:21338885) MGI PMID:21338885 NCBI chrNW_004624888:3,462,132...3,467,701
Ensembl chrNW_004624888:3,462,233...3,468,293 		JBrowse link
G Gdpd5 glycerophosphodiester phosphodiesterase domain containing 5 acts_upstream_of_or_within ISO (PMID:22951639) MGI PMID:22951639 NCBI chrNW_004624817:1,596,687...1,689,428
Ensembl chrNW_004624817:1,596,684...1,688,566 		JBrowse link
G Hprt1 hypoxanthine phosphoribosyltransferase 1 acts_upstream_of_or_within ISO (PMID:11297820) MGI PMID:11297820 NCBI chrNW_004624797:14,148,580...14,184,471 JBrowse link
G Id4 inhibitor of DNA binding 4, HLH protein acts_upstream_of_or_within ISO (PMID:15469968) MGI PMID:15469968 NCBI chrNW_004624756:6,816,364...6,819,144
Ensembl chrNW_004624756:6,814,842...6,819,578 		JBrowse link
G Lhx6 LIM homeobox 6 acts_upstream_of_or_within ISO (PMID:18339674) MGI PMID:18339674 NCBI chrNW_004624760:13,066,632...13,092,006
Ensembl chrNW_004624760:13,066,703...13,097,468 		JBrowse link
G Nkx2-1 NK2 homeobox 1 acts_upstream_of_or_within ISO (PMID:18339674) MGI PMID:18339674 NCBI chrNW_004624838:300,902...304,944
Ensembl chrNW_004624838:300,458...305,517 		JBrowse link
G Nr2e1 nuclear receptor subfamily 2 group E member 1 acts_upstream_of_or_within ISO (PMID:12902391), (PMID:15950290) MGI PMID:12902391 PMID:15950290 NCBI chrNW_004624780:14,098,144...14,119,791
Ensembl chrNW_004624780:14,098,360...14,119,772 		JBrowse link
G Ophn1 oligophrenin 1 involved_in ISO (PMID:27160703) ARUK-UCL PMID:27160703 NCBI chrNW_004624891:1,907,233...2,429,714
Ensembl chrNW_004624891:1,908,044...2,425,144 		JBrowse link
G Pafah1b1 platelet activating factor acetylhydrolase 1b regulatory subunit 1 ISO RGD PMID:16144905 RGD:1601501 NCBI chrNW_004624786:5,223,890...5,306,033
Ensembl chrNW_004624786:5,224,982...5,302,436 		JBrowse link
G Pex5 peroxisomal biogenesis factor 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9288097) Ensembl
MGI		 PMID:9288097 GO_REF:0000107 NCBI chrNW_004624860:3,771,949...3,790,982
Ensembl chrNW_004624860:3,771,963...3,790,985 		JBrowse link
G Sin3a SIN3 transcription regulator family member A involved_in ISO (MGI:6152283|PMID:27399968) UniProt PMID:27399968 MGI:6152283 NCBI chrNW_004624894:300,027...388,397
Ensembl chrNW_004624894:301,082...362,683 		JBrowse link
G Tox thymocyte selection associated high mobility group box involved_in ISO (MGI:5632052|PMID:25527292) UniProt PMID:25527292 MGI:5632052 NCBI chrNW_004624744:32,865,781...33,218,453
Ensembl chrNW_004624744:32,865,720...33,218,643 		JBrowse link
G Znf335 zinc finger protein 335 acts_upstream_of_or_within ISO (PMID:23178126) MGI PMID:23178126 NCBI chrNW_004624790:8,624,316...8,646,712
Ensembl chrNW_004624790:8,625,150...8,647,441 		JBrowse link
cerebral cortex radial glia-guided migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adgrg1 adhesion G protein-coupled receptor G1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624746:28,439,855...28,476,551
Ensembl chrNW_004624746:28,436,895...28,476,926 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (PMID:9232833) MGI PMID:9232833 NCBI chrNW_004624740:18,961,395...19,238,760
Ensembl chrNW_004624740:18,975,596...19,235,900 		JBrowse link
G P2ry12 purinergic receptor P2Y12 involved_in ISO PMID:18183622
PMID:17299767		 ARUK-UCL PMID:17299767 PMID:18183622 RGD:13673751 RGD:13673786 NCBI chrNW_004624730:28,771,020...28,819,179
Ensembl chrNW_004624730:28,772,525...28,782,431 		JBrowse link
G Rtn4 reticulon 4 involved_in ISO (MGI:4461842|PMID:20093372) UniProt PMID:20093372 MGI:4461842 NCBI chrNW_004624833:6,514,409...6,584,061 JBrowse link
G Wdr47 WD repeat domain 47 acts_upstream_of_or_within ISO (PMID:29078390) MGI PMID:29078390 NCBI chrNW_004624772:4,749,748...4,821,490
Ensembl chrNW_004624772:4,750,931...4,806,717 		JBrowse link
cerebral cortex radially oriented cell migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccdc141 coiled-coil domain containing 141 acts_upstream_of_or_within ISO (PMID:20956536) MGI PMID:20956536 NCBI chrNW_004624844:785,097...1,010,155
Ensembl chrNW_004624844:784,029...1,004,008 		JBrowse link
G Cdk5r1 cyclin dependent kinase 5 regulatory subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624875:538,752...542,874
Ensembl chrNW_004624875:538,790...543,044 		JBrowse link
G Cul5 cullin 5 acts_upstream_of_or_within ISO (PMID:24210661) MGI PMID:24210661 NCBI chrNW_004624784:2,736,462...2,822,854
Ensembl chrNW_004624784:2,736,490...2,820,564 		JBrowse link
G Dab1 DAB adaptor protein 1 acts_upstream_of_or_within ISO (PMID:9338785)
(PMID:24210661)		 MGI
RGD		 PMID:9338785 PMID:18160654 PMID:24210661 RGD:2324689 NCBI chrNW_004624862:2,053,637...3,159,712
Ensembl chrNW_004624862:2,892,851...3,144,194 		JBrowse link
G Disc1 DISC1 scaffold protein involved_in ISO (MGI:4821185|PMID:20624590) DFLAT PMID:20624590 MGI:4821185 NCBI chrNW_004624775:17,820,590...18,165,640
Ensembl chrNW_004624775:17,831,272...18,165,668 		JBrowse link
G Dixdc1 DIX domain containing 1 involved_in ISO (MGI:4821185|PMID:20624590) DFLAT PMID:20624590 MGI:4821185 NCBI chrNW_004624784:7,093,457...7,178,448
Ensembl chrNW_004624784:7,094,736...7,175,072 		JBrowse link
G Fbxo45 F-box protein 45 acts_upstream_of_or_within ISO (PMID:19398581) MGI PMID:19398581 NCBI chrNW_004624730:61,667,177...61,684,162 JBrowse link
G Fut10 fucosyltransferase 10 acts_upstream_of_or_within ISO (PMID:23986452) MGI PMID:23986452 NCBI chrNW_004624780:10,448,046...10,599,609
Ensembl chrNW_004624780:10,468,601...10,597,078 		JBrowse link
G Lhx6 LIM homeobox 6 acts_upstream_of_or_within ISO (PMID:17376969) MGI PMID:17376969 NCBI chrNW_004624760:13,066,632...13,092,006
Ensembl chrNW_004624760:13,066,703...13,097,468 		JBrowse link
G Mdga1 MAM domain containing glycosylphosphatidylinositol anchor 1 acts_upstream_of_or_within ISO (PMID:21104742) MGI PMID:21104742 NCBI chrNW_004624754:20,434,625...20,485,402
Ensembl chrNW_004624754:20,434,648...20,481,206 		JBrowse link
G Ndel1 nudE neurodevelopment protein 1 like 1 involved_in ISO (MGI:4821185|PMID:20624590) DFLAT PMID:20624590 MGI:4821185 NCBI chrNW_004624786:10,981,963...11,039,504
Ensembl chrNW_004624786:11,000,615...11,034,689 		JBrowse link
G Pou3f2 POU class 3 homeobox 2 acts_upstream_of_or_within ISO (PMID:12130536) MGI PMID:12130536 NCBI chrNW_004624810:6,283,443...6,287,594
Ensembl chrNW_004624810:6,286,066...6,287,397 		JBrowse link
G Pou3f3 POU class 3 homeobox 3 acts_upstream_of_or_within ISO (PMID:12130536) MGI PMID:12130536 NCBI chrNW_004624749:9,081,906...9,087,318 JBrowse link
G Rac1 Rac family small GTPase 1 acts_upstream_of_or_within ISO (PMID:17409253) MGI PMID:17409253 NCBI chrNW_004624740:30,912,841...30,933,882
Ensembl chrNW_004624740:30,911,598...30,934,025 		JBrowse link
G Rnf7 ring finger protein 7 acts_upstream_of_or_within ISO (PMID:24210661) MGI PMID:24210661 NCBI chrNW_004624730:18,379,177...18,388,505
Ensembl chrNW_004624730:18,379,682...18,390,788 		JBrowse link
G Socs7 suppressor of cytokine signaling 7 acts_upstream_of_or_within ISO (PMID:24210661) MGI PMID:24210661 NCBI chrNW_004624795:4,159,493...4,185,677
Ensembl chrNW_004624795:4,159,402...4,186,037 		JBrowse link
cerebral cortex regionalization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adgrg1 adhesion G protein-coupled receptor G1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24531968) Ensembl
MGI		 PMID:24531968 GO_REF:0000107 NCBI chrNW_004624746:28,439,855...28,476,551
Ensembl chrNW_004624746:28,436,895...28,476,926 		JBrowse link
G Bhlhe22 basic helix-loop-helix family member e22 acts_upstream_of_or_within ISO (PMID:23431145) MGI PMID:23431145 NCBI chrNW_004624744:27,008,292...27,009,602
Ensembl chrNW_004624744:27,008,471...27,009,583 		JBrowse link
G Dmrta2 DMRT like family A2 acts_upstream_of_or_within ISO (PMID:23056351)
(PMID:22923088)		 MGI PMID:22923088 PMID:23056351 NCBI chrNW_004624859:2,644,569...2,649,581
Ensembl chrNW_004624859:2,645,733...2,648,559 		JBrowse link
G Emx1 empty spiracles homeobox 1 acts_upstream_of_or_within ISO (PMID:15147765) MGI PMID:15147765 NCBI chrNW_004624762:685,331...702,040
Ensembl chrNW_004624762:681,308...701,998 		JBrowse link
G Emx2 empty spiracles homeobox 2 acts_upstream_of_or_within ISO (PMID:15147765)
(PMID:12764040)		 MGI PMID:12764040 PMID:15147765 NCBI chrNW_004624737:29,103,378...29,110,356
Ensembl chrNW_004624737:29,103,279...29,110,344 		JBrowse link
G Eomes eomesodermin involved_in
acts_upstream_of_or_within		 ISO (PMID:30186101)
(PMID:23431145)		 MGI PMID:23431145 PMID:30186101 NCBI chrNW_004624788:5,550,569...5,557,342
Ensembl chrNW_004624788:5,550,445...5,557,321 		JBrowse link
G Nr2f1 nuclear receptor subfamily 2 group F member 1 acts_upstream_of_or_within ISO (PMID:17828260) MGI PMID:17828260 NCBI chrNW_004624743:12,479,427...12,488,178
Ensembl chrNW_004624743:12,478,832...12,488,458 		JBrowse link
G Pax6 paired box 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23431145)
(PMID:12764040)		 Ensembl
MGI		 PMID:12764040 PMID:23431145 GO_REF:0000107 NCBI chrNW_004624766:20,536,581...20,554,589
Ensembl chrNW_004624766:20,536,233...20,554,759 		JBrowse link
G Tra2b transformer 2 beta homolog acts_upstream_of_or_within ISO (PMID:24586484) MGI PMID:24586484 NCBI chrNW_004624730:70,801,227...70,822,188
Ensembl chrNW_004624730:70,801,207...70,822,178 		JBrowse link
cerebral cortex tangential migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arx aristaless related homeobox acts_upstream_of_or_within ISO (PMID:17460091) MGI PMID:17460091 NCBI chrNW_004624897:1,279,138...1,303,210 JBrowse link
G Fbxo45 F-box protein 45 acts_upstream_of_or_within ISO (PMID:19398581) MGI PMID:19398581 NCBI chrNW_004624730:61,667,177...61,684,162 JBrowse link
G Lhx6 LIM homeobox 6 acts_upstream_of_or_within ISO (PMID:17376969) MGI PMID:17376969 NCBI chrNW_004624760:13,066,632...13,092,006
Ensembl chrNW_004624760:13,066,703...13,097,468 		JBrowse link
G Reln reelin acts_upstream_of_or_within ISO (PMID:16901480) MGI PMID:16901480 NCBI chrNW_004624739:25,472,626...25,918,064
Ensembl chrNW_004624739:25,472,561...25,918,167 		JBrowse link
chemorepulsion involved in embryonic olfactory bulb interneuron precursor migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slit1 slit guidance ligand 1 NOT|involved_in ISO (PMID:11748139) UniProt PMID:11748139 NCBI chrNW_004624737:8,458,444...8,632,316
Ensembl chrNW_004624737:8,460,508...8,632,302 		JBrowse link
G Slit2 slit guidance ligand 2 NOT|involved_in ISO (PMID:11748139) UniProt PMID:11748139 NCBI chrNW_004624755:11,470,810...11,819,800
Ensembl chrNW_004624755:11,472,377...11,819,266 		JBrowse link
G Slit3 slit guidance ligand 3 NOT|involved_in ISO (PMID:11748139) UniProt PMID:11748139 NCBI chrNW_004624733:20,683,680...21,293,663
Ensembl chrNW_004624733:20,683,814...21,291,088 		JBrowse link
chemorepulsion involved in interneuron migration from the subpallium to the cortex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nrg1 neuregulin 1 acts_upstream_of_or_within ISO (PMID:22376909) MGI PMID:22376909 NCBI chrNW_004624780:11,297,306...11,525,236
Ensembl chrNW_004624780:11,301,182...12,424,066 		JBrowse link
G Nrg3 neuregulin 3 acts_upstream_of_or_within ISO (PMID:22376909) MGI PMID:22376909 NCBI chrNW_004624841:4,213,089...5,285,255
Ensembl chrNW_004624841:4,219,084...5,285,240 		JBrowse link
chemorepulsion involved in postnatal olfactory bulb interneuron migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Robo1 roundabout guidance receptor 1 involved_in ISO (PMID:15207848) UniProt PMID:15207848 NCBI chrNW_004624874:4,234,640...5,359,333
Ensembl chrNW_004624874:4,949,538...5,357,690 		JBrowse link
G Slit2 slit guidance ligand 2 involved_in ISO (PMID:15207848) UniProt PMID:15207848 NCBI chrNW_004624755:11,470,810...11,819,800
Ensembl chrNW_004624755:11,472,377...11,819,266 		JBrowse link
commitment of neuronal cell to specific neuron type in forebrain term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl1 achaete-scute family bHLH transcription factor 1 acts_upstream_of_or_within ISO (PMID:22991444) MGI PMID:22991444 NCBI chrNW_004624750:5,487,046...5,489,399
Ensembl chrNW_004624750:5,487,053...5,493,339 		JBrowse link
G Bcl11b BCL11 transcription factor B acts_upstream_of_or_within ISO (PMID:23144223) MGI PMID:23144223 NCBI chrNW_004624734:4,560,362...4,649,219
Ensembl chrNW_004624734:4,560,699...4,647,858 		JBrowse link
G Fezf2 FEZ family zinc finger 2 acts_upstream_of_or_within ISO (PMID:21338885) MGI PMID:21338885 NCBI chrNW_004624888:3,462,132...3,467,701
Ensembl chrNW_004624888:3,462,233...3,468,293 		JBrowse link
G Gata2 GATA binding protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22991444) Ensembl
MGI		 PMID:22991444 GO_REF:0000107 NCBI chrNW_004624961:147,685...155,614
Ensembl chrNW_004624961:143,358...154,003 		JBrowse link
G Pax6 paired box 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11124115) Ensembl
MGI		 PMID:11124115 GO_REF:0000107 NCBI chrNW_004624766:20,536,581...20,554,589
Ensembl chrNW_004624766:20,536,233...20,554,759 		JBrowse link
G Tbr1 T-box brain transcription factor 1 acts_upstream_of_or_within ISO (PMID:23144223) MGI PMID:23144223 NCBI chrNW_004624732:4,043,867...4,052,621
Ensembl chrNW_004624732:4,043,867...4,052,551 		JBrowse link
corpus callosum development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg16l1 autophagy related 16 like 1 acts_upstream_of_or_within ISO (PMID:29078390) MGI PMID:29078390 NCBI chrNW_004624843:5,797,725...5,838,768
Ensembl chrNW_004624843:5,805,069...5,838,741 		JBrowse link
G Cacna1c calcium voltage-gated channel subunit alpha1 C ISO RGD PMID:22473424 RGD:10411906 NCBI chrNW_004624735:10,201,030...10,927,349
Ensembl chrNW_004624735:10,201,526...10,432,896 		JBrowse link
G Cdk5 cyclin dependent kinase 5 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:18032654) MGI
Ensembl		 PMID:18032654 GO_REF:0000107 NCBI chrNW_004624800:5,562,468...5,566,458
Ensembl chrNW_004624800:5,562,462...5,569,937 		JBrowse link
G Coro1c coronin 1C acts_upstream_of_or_within ISO (PMID:29078390) MGI PMID:29078390 NCBI chrNW_004624747:11,879,315...11,967,496
Ensembl chrNW_004624747:11,879,215...11,963,250 		JBrowse link
G Dcc DCC netrin 1 receptor ISO RGD PMID:22473424 RGD:10411906 NCBI chrNW_004624778:15,979,350...17,225,263
Ensembl chrNW_004624778:15,979,467...17,222,039 		JBrowse link
G Dmxl2 Dmx like 2 acts_upstream_of_or_within ISO (PMID:29078390) MGI PMID:29078390 NCBI chrNW_004624731:8,702,288...8,843,807
Ensembl chrNW_004624731:8,702,137...8,842,653 		JBrowse link
G Ephb2 EPH receptor B2 involved_in ISO (MGI:84499|PMID:8947026) UniProt PMID:8947026 MGI:84499 NCBI chrNW_004624764:7,421,818...7,599,800
Ensembl chrNW_004624764:7,421,862...7,593,482 		JBrowse link
G Ephb3 EPH receptor B3 involved_in ISO (MGI:84499|PMID:8947026) UniProt PMID:8947026 MGI:84499 NCBI chrNW_004624730:71,964,337...71,983,021
Ensembl chrNW_004624730:71,965,108...71,982,593 		JBrowse link
G Herc1 HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 acts_upstream_of_or_within ISO (PMID:29078390) MGI PMID:29078390 NCBI chrNW_004624781:8,694,044...8,907,701
Ensembl chrNW_004624781:8,745,780...8,907,701 		JBrowse link
G Kcna1 potassium voltage-gated channel subfamily A member 1 ISO RGD PMID:22473424 RGD:10411906 NCBI chrNW_004624860:1,915,108...1,923,071
Ensembl chrNW_004624860:1,915,344...1,923,062 		JBrowse link
G Kcna2 potassium voltage-gated channel subfamily A member 2 ISO RGD PMID:22473424 RGD:10411906 NCBI chrNW_004624772:6,298,113...6,311,614
Ensembl chrNW_004624772:6,305,550...6,309,906 		JBrowse link
G Kcna3 potassium voltage-gated channel subfamily A member 3 ISO RGD PMID:22473424 RGD:10411906 NCBI chrNW_004624772:6,360,169...6,376,281
Ensembl chrNW_004624772:6,364,325...6,376,208 		JBrowse link
G Kcnc1 potassium voltage-gated channel subfamily C member 1 ISO RGD PMID:22473424 RGD:10411906 NCBI chrNW_004624766:9,360,038...9,400,106
Ensembl chrNW_004624766:9,359,511...9,400,106 		JBrowse link
G Kcnc3 potassium voltage-gated channel subfamily C member 3 ISO RGD PMID:22473424 RGD:10411906 NCBI chrNW_004624832:4,161,510...4,175,744
Ensembl chrNW_004624832:4,161,068...4,175,721 		JBrowse link
G Kcnc4 potassium voltage-gated channel subfamily C member 4 ISO RGD PMID:22473424 RGD:10411906 NCBI chrNW_004624772:5,967,042...6,004,647
Ensembl chrNW_004624772:5,967,071...5,991,484 		JBrowse link
G Kif21b kinesin family member 21B acts_upstream_of_or_within ISO (PMID:29078390) MGI PMID:29078390 NCBI chrNW_004624807:9,633,009...9,681,228
Ensembl chrNW_004624807:9,633,281...9,677,260 		JBrowse link
G Lpar1 lysophosphatidic acid receptor 1 ISO RGD PMID:9753172 RGD:2317716 NCBI chrNW_004624758:518,070...668,915
Ensembl chrNW_004624758:519,249...669,471 		JBrowse link
G Nsun5 NOP2/Sun RNA methyltransferase 5 involved_in ISO (MGI:6359541|PMID:31174389) UniProt PMID:31174389 MGI:6359541 NCBI chrNW_004624740:14,413,451...14,418,255
Ensembl chrNW_004624740:14,413,489...14,419,340 		JBrowse link
G Ptprs protein tyrosine phosphatase receptor type S acts_upstream_of_or_within ISO (PMID:15842738) MGI PMID:15842738 NCBI chrNW_004624828:4,688,555...4,764,805
Ensembl chrNW_004624828:4,716,249...4,764,614 		JBrowse link
G Rpgrip1l RPGRIP1 like acts_upstream_of_or_within ISO (PMID:17558409) MGI PMID:17558409 NCBI chrNW_004624757:3,080,162...3,172,750
Ensembl chrNW_004624757:3,079,712...3,172,115 		JBrowse link
G Rtn4r reticulon 4 receptor involved_in ISO (MGI:5824191|PMID:27339102) UniProt PMID:27339102 MGI:5824191 NCBI chrNW_004624747:829,947...855,942
Ensembl chrNW_004624747:829,850...855,991 		JBrowse link
G Rtn4rl1 reticulon 4 receptor like 1 involved_in ISO (MGI:5824191|PMID:27339102) UniProt PMID:27339102 MGI:5824191 NCBI chrNW_004624786:4,634,489...4,703,672
Ensembl chrNW_004624786:4,634,268...4,703,077 		JBrowse link
G Rtn4rl2 reticulon 4 receptor like 2 involved_in ISO (MGI:5824191|PMID:27339102) UniProt PMID:27339102 MGI:5824191 NCBI chrNW_004624864:3,152,958...3,186,043 JBrowse link
G Ryk receptor like tyrosine kinase involved_in ISO (MGI:3625635|PMID:16723543) UniProt PMID:16723543 MGI:3625635 NCBI chrNW_004624730:10,462,590...10,568,780 JBrowse link
G Ulk4 unc-51 like kinase 4 acts_upstream_of_or_within ISO (PMID:24284070) MGI PMID:24284070 NCBI chrNW_004624730:77,495,705...77,876,547
Ensembl chrNW_004624730:77,495,747...77,875,622 		JBrowse link
G Wdr37 WD repeat domain 37 acts_upstream_of_or_within ISO (PMID:29078390) MGI PMID:29078390 NCBI chrNW_004624775:9,768,568...9,858,085
Ensembl chrNW_004624775:9,768,397...9,857,837 		JBrowse link
G Wdr47 WD repeat domain 47 acts_upstream_of_or_within ISO (PMID:29078390) MGI PMID:29078390 NCBI chrNW_004624772:4,749,748...4,821,490
Ensembl chrNW_004624772:4,750,931...4,806,717 		JBrowse link
G Wdr89 WD repeat domain 89 acts_upstream_of_or_within ISO (PMID:29078390) MGI PMID:29078390 NCBI chrNW_004624734:37,384,138...37,420,878
Ensembl chrNW_004624734:37,419,141...37,420,316 		JBrowse link
corpus callosum morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bhlhe22 basic helix-loop-helix family member e22 acts_upstream_of_or_within ISO (PMID:22284184) MGI PMID:22284184 NCBI chrNW_004624744:27,008,292...27,009,602
Ensembl chrNW_004624744:27,008,471...27,009,583 		JBrowse link
G CUNH12orf57 chromosome unknown C12orf57 homolog involved_in ISO (PMID:23453665), (PMID:23453666), (PMID:23633300), (PMID:24798461) UniProt PMID:23453665 PMID:23453666 PMID:23633300 PMID:24798461 NCBI chrNW_004624860:3,578,147...3,580,059
Ensembl chrNW_004624860:3,578,336...3,580,059 		JBrowse link
G Nin ninein acts_upstream_of_or_within ISO (PMID:25741725) MGI PMID:25741725 NCBI chrNW_004624731:18,097,483...18,196,136
Ensembl chrNW_004624731:18,106,355...18,188,022 		JBrowse link
G Pafah1b1 platelet activating factor acetylhydrolase 1b regulatory subunit 1 involved_in ISO (PMID:9063735) BHF-UCL PMID:9063735 NCBI chrNW_004624786:5,223,890...5,306,033
Ensembl chrNW_004624786:5,224,982...5,302,436 		JBrowse link
G Prdm8 PR/SET domain 8 acts_upstream_of_or_within ISO (PMID:22284184) MGI PMID:22284184 NCBI chrNW_004624757:10,801,701...10,809,887
Ensembl chrNW_004624757:10,802,406...10,805,704 		JBrowse link
G Szt2 SZT2 subunit of KICSTOR complex involved_in ISO (PMID:23932106) UniProt PMID:23932106 NCBI chrNW_004624892:2,703,898...2,754,130
Ensembl chrNW_004624892:2,703,936...2,756,565 		JBrowse link
G Tsku tsukushi, small leucine rich proteoglycan acts_upstream_of_or_within ISO (PMID:21055390) MGI PMID:21055390 NCBI chrNW_004624817:364,543...379,742
Ensembl chrNW_004624817:366,101...373,034 		JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 acts_upstream_of_or_within ISO (PMID:25741725) MGI PMID:25741725 NCBI chrNW_004624732:44,097,348...44,226,701
Ensembl chrNW_004624732:44,101,613...44,139,997 		JBrowse link
corticotropin hormone secreting cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp2 bone morphogenetic protein 2 acts_upstream_of_or_within ISO (PMID:9463347) MGI PMID:9463347 NCBI chrNW_004624741:7,706,205...7,717,677
Ensembl chrNW_004624741:7,706,236...7,719,484 		JBrowse link
G Fgf2 fibroblast growth factor 2 acts_upstream_of_or_within ISO (PMID:9463347) MGI PMID:9463347 NCBI chrNW_004624777:3,268,674...3,321,424
Ensembl chrNW_004624777:3,268,953...3,321,145 		JBrowse link
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO (PMID:9463347) MGI PMID:9463347 NCBI chrNW_004624831:1,251,991...1,259,247
Ensembl chrNW_004624831:1,253,044...1,257,741 		JBrowse link
dentate gyrus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atat1 alpha tubulin acetyltransferase 1 acts_upstream_of_or_within ISO (PMID:23720746) MGI PMID:23720746 NCBI chrNW_004624754:25,058,312...25,069,052
Ensembl chrNW_004624754:25,058,204...25,069,561 		JBrowse link
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 acts_upstream_of_or_within ISO (PMID:30498428) MGI PMID:30498428 NCBI chrNW_004624731:13,775,414...13,789,380
Ensembl chrNW_004624731:13,777,656...13,785,366 		JBrowse link
G Btg2 BTG anti-proliferation factor 2 acts_upstream_of_or_within ISO (PMID:20020054) MGI PMID:20020054 NCBI chrNW_004624807:7,541,335...7,545,412
Ensembl chrNW_004624807:7,540,602...7,545,521 		JBrowse link
G Csf1r colony stimulating factor 1 receptor ISO RGD PMID:33450391 RGD:126781687 NCBI chrNW_004624774:9,363,156...9,391,939
Ensembl chrNW_004624774:9,363,908...9,391,986 		JBrowse link
G Drd1 dopamine receptor D1 acts_upstream_of_or_within ISO (PMID:17360497) MGI PMID:17360497 NCBI chrNW_004624733:14,517,540...14,522,173
Ensembl chrNW_004624733:14,518,146...14,520,905 		JBrowse link
G Emx2 empty spiracles homeobox 2 acts_upstream_of_or_within ISO (PMID:10729342) MGI PMID:10729342 NCBI chrNW_004624737:29,103,378...29,110,356
Ensembl chrNW_004624737:29,103,279...29,110,344 		JBrowse link
G Fezf2 FEZ family zinc finger 2 acts_upstream_of_or_within ISO (PMID:16971467) MGI PMID:16971467 NCBI chrNW_004624888:3,462,132...3,467,701
Ensembl chrNW_004624888:3,462,233...3,468,293 		JBrowse link
G Fxr1 FMR1 autosomal homolog 1 involved_in ISO (MGI:5904238|PMID:28204491) UniProt PMID:28204491 MGI:5904238 NCBI chrNW_004624730:58,679,945...58,743,688
Ensembl chrNW_004624730:58,680,030...58,743,229 		JBrowse link
G Fxr2 FMR1 autosomal homolog 2 involved_in ISO (MGI:5141571|PMID:21658585) UniProt PMID:21658585 MGI:5141571 NCBI chrNW_004624786:10,205,830...10,226,973
Ensembl chrNW_004624786:10,205,835...10,226,513 		JBrowse link
G Kcnq2 potassium voltage-gated channel subfamily Q member 2 acts_upstream_of_or_within ISO (PMID:16464983) MGI PMID:16464983 NCBI chrNW_004624741:29,089,894...29,143,681
Ensembl chrNW_004624741:29,091,119...29,143,589 		JBrowse link
G Kif3a kinesin family member 3A acts_upstream_of_or_within ISO (PMID:18297065) MGI PMID:18297065 NCBI chrNW_004624733:39,354,360...39,406,574
Ensembl chrNW_004624733:39,354,232...39,407,121 		JBrowse link
G Large1 LARGE xylosyl- and glucuronyltransferase 1 acts_upstream_of_or_within ISO (PMID:21970971) MGI PMID:21970971 NCBI chrNW_004624750:1,190,712...1,524,051
Ensembl chrNW_004624750:1,286,336...1,527,159 		JBrowse link
G Lef1 lymphoid enhancer binding factor 1 acts_upstream_of_or_within ISO (PMID:10631168) MGI PMID:10631168 NCBI chrNW_004624830:1,320,034...1,422,774
Ensembl chrNW_004624830:1,321,387...1,424,389 		JBrowse link
G Lmx1a LIM homeobox transcription factor 1 alpha involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:1638738) Ensembl
MGI		 PMID:1638738 GO_REF:0000107 NCBI chrNW_004624826:3,541,291...3,689,039
Ensembl chrNW_004624826:3,543,191...3,689,062 		JBrowse link
G LOC101715424 tubulin alpha-1B chain-like involved_in ISO (PMID:21041996) MGI PMID:21041996 NCBI chrNW_004624816:3,001,252...3,006,166 JBrowse link
G Mdk midkine involved_in ISO (MGI:2178952|PMID:10096022) DFLAT PMID:10096022 MGI:2178952 NCBI chrNW_004624767:2,171,096...2,173,436
Ensembl chrNW_004624767:2,171,096...2,173,512 		JBrowse link
G Mef2c myocyte enhancer factor 2C ISO RGD PMID:18949272 RGD:5131610 NCBI chrNW_004624743:8,072,871...8,235,174
Ensembl chrNW_004624743:8,072,673...8,235,252 		JBrowse link
G Neurod1 neuronal differentiation 1 involved_in
acts_upstream_of_or_within		 ISO (MGI:1352314|PMID:10639171), (MGI:2159022|PMID:10398678)
(PMID:10804213)		 UniProt
MGI		 PMID:10398678 PMID:10639171 PMID:10804213 MGI:1352314 MGI:2159022 NCBI chrNW_004624844:3,493,819...3,497,814
Ensembl chrNW_004624844:3,494,677...3,497,759 		JBrowse link
G Neurod6 neuronal differentiation 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10804213) Ensembl
MGI		 PMID:10804213 GO_REF:0000107 NCBI chrNW_004624783:533,727...537,180
Ensembl chrNW_004624783:534,295...537,166 		JBrowse link
G Nr2e1 nuclear receptor subfamily 2 group E member 1 acts_upstream_of_or_within ISO (PMID:12527005)
(PMID:17953618)		 MGI PMID:12527005 PMID:17953618 NCBI chrNW_004624780:14,098,144...14,119,791
Ensembl chrNW_004624780:14,098,360...14,119,772 		JBrowse link
G Pianp PILR alpha associated neural protein acts_upstream_of_or_within ISO (PMID:31511635) MGI PMID:31511635 NCBI chrNW_004624860:3,396,105...3,417,986
Ensembl chrNW_004624860:3,396,237...3,400,909 		JBrowse link
G Pomgnt1 protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-) involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21970971) Ensembl
MGI		 PMID:21970971 GO_REF:0000107 NCBI chrNW_004624906:2,120,759...2,131,024
Ensembl chrNW_004624906:2,119,684...2,135,656 		JBrowse link
G Pomt2 protein O-mannosyltransferase 2 acts_upstream_of_or_within ISO (PMID:21970971) MGI PMID:21970971 NCBI chrNW_004624734:24,595,748...24,636,845
Ensembl chrNW_004624734:24,595,702...24,636,937 		JBrowse link
G Prox1 prospero homeobox 1 involved_in ISO (MGI:4849596|PMID:20808958) BHF-UCL PMID:20808958 MGI:4849596 NCBI chrNW_004624771:19,188,543...19,238,621
Ensembl chrNW_004624771:19,196,366...19,233,338 		JBrowse link
G Pten phosphatase and tensin homolog involved_in ISO (MGI:3759727|PMID:17706614) CACAO PMID:17706614 MGI:3759727 NCBI chrNW_004624791:13,975,235...14,056,900 JBrowse link
G Reln reelin ISO RGD PMID:15459104 RGD:2317799 NCBI chrNW_004624739:25,472,626...25,918,064
Ensembl chrNW_004624739:25,472,561...25,918,167 		JBrowse link
G Sct secretin acts_upstream_of_or_within ISO (PMID:21159798) MGI PMID:21159798 NCBI chrNW_004624766:21,841,994...21,842,754
Ensembl chrNW_004624766:21,842,014...21,842,683 		JBrowse link
G Smo smoothened, frizzled class receptor acts_upstream_of_or_within ISO (PMID:18297065) MGI PMID:18297065 NCBI chrNW_004624783:7,012,385...7,039,302
Ensembl chrNW_004624783:7,011,899...7,039,921 		JBrowse link
G Tmem108 transmembrane protein 108 involved_in ISO (MGI:5825380|PMID:28096412) UniProt PMID:28096412 MGI:5825380 NCBI chrNW_004624730:9,314,308...9,683,324
Ensembl chrNW_004624730:9,522,166...9,683,365 		JBrowse link
G Vps13b vacuolar protein sorting 13 homolog B acts_upstream_of_or_within ISO (PMID:37573958) MGI PMID:37573958 NCBI chrNW_004624763:6,101,943...6,866,457
Ensembl chrNW_004624763:6,102,674...6,864,817 		JBrowse link
diencephalon development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sema5a semaphorin 5A involved_in ISO PMID:15603739 UniProt PMID:15603739 RGD:8553809 NCBI chrNW_004624751:6,429,814...6,913,673
Ensembl chrNW_004624751:6,436,854...6,738,216 		JBrowse link
G Six3 SIX homeobox 3 acts_upstream_of_or_within ISO (PMID:18094027) MGI PMID:18094027 NCBI chrNW_004624738:26,379,172...26,391,669
Ensembl chrNW_004624738:26,380,088...26,394,252 		JBrowse link
G Wnt1 Wnt family member 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:18094027) MGI
Ensembl		 PMID:18094027 GO_REF:0000107 NCBI chrNW_004624816:3,209,605...3,212,969
Ensembl chrNW_004624816:3,209,699...3,212,606 		JBrowse link
diencephalon morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Otx1 orthodenticle homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20816794) Ensembl
MGI		 PMID:20816794 GO_REF:0000107 NCBI chrNW_004624762:10,379,775...10,388,262
Ensembl chrNW_004624762:10,379,917...10,386,708 		JBrowse link
G Otx2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO (PMID:20816794) MGI PMID:20816794 NCBI chrNW_004624884:1,830,645...1,840,213 JBrowse link
G Sox2 SRY-box transcription factor 2 acts_upstream_of_or_within ISO (PMID:15240551) MGI PMID:15240551 NCBI chrNW_004624730:59,570,879...59,573,001
Ensembl chrNW_004624730:59,570,915...59,571,871 		JBrowse link
embryonic olfactory bulb interneuron precursor migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arx aristaless related homeobox acts_upstream_of_or_within ISO (PMID:15677725) MGI PMID:15677725 NCBI chrNW_004624897:1,279,138...1,303,210 JBrowse link
G Rac1 Rac family small GTPase 1 acts_upstream_of_or_within ISO (PMID:17409253) MGI PMID:17409253 NCBI chrNW_004624740:30,912,841...30,933,882
Ensembl chrNW_004624740:30,911,598...30,934,025 		JBrowse link
extension of a leading process involved in cell motility in cerebral cortex radial glia guided migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Srgap2 SLIT-ROBO Rho GTPase activating protein 2 involved_in ISO (MGI:4366584|PMID:19737524) UniProt PMID:19737524 MGI:4366584 NCBI chrNW_004624807:4,937,573...5,169,104
Ensembl chrNW_004624807:4,935,472...5,169,050 		JBrowse link
fibroblast growth factor receptor signaling pathway involved in orbitofrontal cortex development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgfr1 fibroblast growth factor receptor 1 involved_in ISO (MGI:4452541|PMID:20410112) UniProt PMID:20410112 MGI:4452541 NCBI chrNW_004624780:5,161,245...5,212,641
Ensembl chrNW_004624780:5,161,073...5,213,870 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 involved_in ISO (MGI:4452541|PMID:20410112) UniProt PMID:20410112 MGI:4452541 NCBI chrNW_004624737:25,052,698...25,158,346
Ensembl chrNW_004624737:25,052,606...25,158,529 		JBrowse link
forebrain anterior/posterior pattern specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fezf1 FEZ family zinc finger 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:16971467) MGI
Ensembl		 PMID:16971467 GO_REF:0000107 NCBI chrNW_004624783:13,715,987...13,719,287
Ensembl chrNW_004624783:13,713,422...13,718,604 		JBrowse link
G Fezf2 FEZ family zinc finger 2 acts_upstream_of_or_within ISO (PMID:16971467) MGI PMID:16971467 NCBI chrNW_004624888:3,462,132...3,467,701
Ensembl chrNW_004624888:3,462,233...3,468,293 		JBrowse link
G Six3 SIX homeobox 3 acts_upstream_of_or_within ISO (PMID:18094027) MGI PMID:18094027 NCBI chrNW_004624738:26,379,172...26,391,669
Ensembl chrNW_004624738:26,380,088...26,394,252 		JBrowse link
G Wnt1 Wnt family member 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18094027) Ensembl
MGI		 PMID:18094027 GO_REF:0000107 NCBI chrNW_004624816:3,209,605...3,212,969
Ensembl chrNW_004624816:3,209,699...3,212,606 		JBrowse link
forebrain astrocyte development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kras KRAS proto-oncogene, GTPase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22577135) Ensembl
MGI		 PMID:22577135 GO_REF:0000107 NCBI chrNW_004624752:13,809,741...13,847,020
Ensembl chrNW_004624752:13,809,775...13,844,166 		JBrowse link
G Nf1 neurofibromin 1 acts_upstream_of_or_within ISO (PMID:15944386) MGI PMID:15944386 NCBI chrNW_004624875:3,636,762...3,959,991
Ensembl chrNW_004624875:3,636,924...3,956,576 		JBrowse link
G Pou3f2 POU class 3 homeobox 2 acts_upstream_of_or_within ISO (PMID:8543156) MGI PMID:8543156 NCBI chrNW_004624810:6,283,443...6,287,594
Ensembl chrNW_004624810:6,286,066...6,287,397 		JBrowse link
forebrain cell migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Axl AXL receptor tyrosine kinase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18787040) Ensembl
MGI		 PMID:18787040 GO_REF:0000107 NCBI chrNW_004624907:76,236...106,765
Ensembl chrNW_004624907:77,806...106,228 		JBrowse link
G Emx2 empty spiracles homeobox 2 acts_upstream_of_or_within ISO (PMID:10729342) MGI PMID:10729342 NCBI chrNW_004624737:29,103,378...29,110,356
Ensembl chrNW_004624737:29,103,279...29,110,344 		JBrowse link
G Tyro3 TYRO3 protein tyrosine kinase acts_upstream_of_or_within ISO (PMID:18787040) MGI PMID:18787040 NCBI chrNW_004624804:8,711,487...8,729,025
Ensembl chrNW_004624804:8,710,821...8,728,072 		JBrowse link
forebrain dorsal/ventral pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO (PMID:16613831) MGI PMID:16613831 NCBI chrNW_004624831:1,251,991...1,259,247
Ensembl chrNW_004624831:1,253,044...1,257,741 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (PMID:10625551) MGI PMID:10625551 NCBI chrNW_004624740:18,961,395...19,238,760
Ensembl chrNW_004624740:18,975,596...19,235,900 		JBrowse link
G Gsx2 GS homeobox 2 acts_upstream_of_or_within ISO (PMID:11060228), (PMID:11124115), (PMID:18701439) MGI PMID:11060228 PMID:11124115 PMID:18701439 NCBI chrNW_004624761:15,387,217...15,389,404
Ensembl chrNW_004624761:15,387,674...15,389,229 		JBrowse link
G Nkx2-1 NK2 homeobox 1 acts_upstream_of_or_within ISO (PMID:10393115), (PMID:11163262), (PMID:11830575) MGI PMID:10393115 PMID:11163262 PMID:11830575 NCBI chrNW_004624838:300,902...304,944
Ensembl chrNW_004624838:300,458...305,517 		JBrowse link
G Pax6 paired box 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11050125), (PMID:18701439), (PMID:24528677)
(PMID:11124115)		 Ensembl
MGI		 PMID:11050125 PMID:11124115 PMID:18701439 PMID:24528677 GO_REF:0000107 NCBI chrNW_004624766:20,536,581...20,554,589
Ensembl chrNW_004624766:20,536,233...20,554,759 		JBrowse link
G Six3 SIX homeobox 3 involved_in ISO (PMID:18791198) UniProt PMID:18791198 NCBI chrNW_004624738:26,379,172...26,391,669
Ensembl chrNW_004624738:26,380,088...26,394,252 		JBrowse link
G Ttc21b tetratricopeptide repeat domain 21B acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:19732765) MGI
Ensembl		 PMID:19732765 GO_REF:0000107 NCBI chrNW_004624787:3,685,700...3,745,018
Ensembl chrNW_004624787:3,686,088...3,744,895 		JBrowse link
forebrain generation of neurons term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:14715945) MGI PMID:14715945 NCBI chrNW_004624752:25,605,444...25,756,573
Ensembl chrNW_004624752:25,605,302...25,751,893 		JBrowse link
G Nr2e1 nuclear receptor subfamily 2 group E member 1 acts_upstream_of_or_within ISO (PMID:9394001) MGI PMID:9394001 NCBI chrNW_004624780:14,098,144...14,119,791
Ensembl chrNW_004624780:14,098,360...14,119,772 		JBrowse link
forebrain morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO (PMID:16613831) MGI PMID:16613831 NCBI chrNW_004624831:1,251,991...1,259,247
Ensembl chrNW_004624831:1,253,044...1,257,741 		JBrowse link
G Gak cyclin G associated kinase acts_upstream_of_or_within ISO (PMID:18434600) MGI PMID:18434600 NCBI chrNW_004624755:26,208,207...26,250,937
Ensembl chrNW_004624755:26,208,334...26,250,533 		JBrowse link
G Gdf7 growth differentiation factor 7 acts_upstream_of_or_within ISO (PMID:10693795) MGI PMID:10693795 NCBI chrNW_004624738:3,281,828...3,286,627 JBrowse link
G Gsx2 GS homeobox 2 acts_upstream_of_or_within ISO (PMID:9398437) MGI PMID:9398437 NCBI chrNW_004624761:15,387,217...15,389,404
Ensembl chrNW_004624761:15,387,674...15,389,229 		JBrowse link
G Hesx1 HESX homeobox 1 acts_upstream_of_or_within ISO (PMID:10882526), (PMID:9620767) MGI PMID:9620767 PMID:10882526 NCBI chrNW_004624822:74,344...102,484
Ensembl chrNW_004624822:74,373...101,828 		JBrowse link
G Hhex hematopoietically expressed homeobox acts_upstream_of_or_within ISO (PMID:21445260) MGI PMID:21445260 NCBI chrNW_004624737:3,897,907...3,903,828
Ensembl chrNW_004624737:3,897,871...3,904,083 		JBrowse link
G Ift88 intraflagellar transport 88 acts_upstream_of_or_within ISO (PMID:19036983) MGI PMID:19036983 NCBI chrNW_004624776:16,954,368...17,086,377
Ensembl chrNW_004624776:16,954,507...17,086,337 		JBrowse link
G LOC101715424 tubulin alpha-1B chain-like involved_in ISO (PMID:31386652) MGI PMID:31386652 NCBI chrNW_004624816:3,001,252...3,006,166 JBrowse link
G Nf1 neurofibromin 1 acts_upstream_of_or_within ISO (PMID:11297510) MGI PMID:11297510 NCBI chrNW_004624875:3,636,762...3,959,991
Ensembl chrNW_004624875:3,636,924...3,956,576 		JBrowse link
G Pten phosphatase and tensin homolog involved_in ISO (MGI:3629385|PMID:16675393) BHF-UCL PMID:16675393 MGI:3629385 NCBI chrNW_004624791:13,975,235...14,056,900 JBrowse link
G Smo smoothened, frizzled class receptor involved_in ISO (MGI:5142377|PMID:11517919) BHF-UCL PMID:11517919 MGI:5142377 NCBI chrNW_004624783:7,012,385...7,039,302
Ensembl chrNW_004624783:7,011,899...7,039,921 		JBrowse link
G Uchl5 ubiquitin C-terminal hydrolase L5 involved_in ISO (MGI:4849324|PMID:21048919) BHF-UCL PMID:21048919 MGI:4849324 NCBI chrNW_004624814:529,100...568,387
Ensembl chrNW_004624814:529,084...567,666 		JBrowse link
forebrain neuroblast division term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aspm assembly factor for spindle microtubules acts_upstream_of_or_within ISO (PMID:16798874) MGI PMID:16798874 NCBI chrNW_004624798:3,164,145...3,223,810
Ensembl chrNW_004624798:3,165,393...3,225,181 		JBrowse link
G Lef1 lymphoid enhancer binding factor 1 acts_upstream_of_or_within ISO (PMID:14715945) MGI PMID:14715945 NCBI chrNW_004624830:1,320,034...1,422,774
Ensembl chrNW_004624830:1,321,387...1,424,389 		JBrowse link
forebrain neuron development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf8 fibroblast growth factor 8 ISO induction of dopaminergic neurons in the rostral forebrain RGD PMID:9630220 RGD:2289424 NCBI chrNW_004624831:1,251,991...1,259,247
Ensembl chrNW_004624831:1,253,044...1,257,741 		JBrowse link
G Gbx2 gastrulation brain homeobox 2 acts_upstream_of_or_within ISO (PMID:21048141) MGI PMID:21048141 NCBI chrNW_004624847:1,878,946...1,881,794
Ensembl chrNW_004624847:1,879,007...1,881,669 		JBrowse link
G Gnaq G protein subunit alpha q involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15340067) Ensembl
MGI		 PMID:15340067 GO_REF:0000107 NCBI chrNW_004624811:5,158,665...5,485,812
Ensembl chrNW_004624811:5,163,793...5,486,140 		JBrowse link
G Lhx6 LIM homeobox 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15217369) TreeGrafter
MGI		 PMID:15217369 GO_REF:0000118 NCBI chrNW_004624760:13,066,632...13,092,006
Ensembl chrNW_004624760:13,066,703...13,097,468 		JBrowse link
G Lhx8 LIM homeobox 8 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15217369) TreeGrafter
MGI
Ensembl		 PMID:15217369 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624742:21,638,213...21,662,979
Ensembl chrNW_004624742:21,638,856...21,662,776 		JBrowse link
G Rapgef2 Rap guanine nucleotide exchange factor 2 involved_in ISO (MGI:3848551|PMID:19453629) UniProt PMID:19453629 MGI:3848551 NCBI chrNW_004624848:3,968,845...4,184,740
Ensembl chrNW_004624848:3,968,362...4,182,885 		JBrowse link
G Secisbp2 SECIS binding protein 2 acts_upstream_of_or_within ISO (PMID:24844465) MGI PMID:24844465 NCBI chrNW_004624765:23,246,342...23,296,071
Ensembl chrNW_004624765:23,247,135...23,296,465 		JBrowse link
G Sox1 SRY-box transcription factor 1 acts_upstream_of_or_within ISO (PMID:15882093) MGI PMID:15882093 NCBI chrNW_004624793:1,341,643...1,648,168
Ensembl chrNW_004624793:1,370,243...1,371,358 		JBrowse link
G Tfap2a transcription factor AP-2 alpha acts_upstream_of_or_within ISO (PMID:10803593) MGI PMID:10803593 NCBI chrNW_004624756:15,413,950...15,436,037
Ensembl chrNW_004624756:15,418,260...15,436,379 		JBrowse link
forebrain neuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl1 achaete-scute family bHLH transcription factor 1 ISO RGD PMID:17936272 RGD:2314144 NCBI chrNW_004624750:5,487,046...5,489,399
Ensembl chrNW_004624750:5,487,053...5,493,339 		JBrowse link
G Csf1r colony stimulating factor 1 receptor involved_in ISO (MGI:5430247|PMID:22542597) ParkinsonsUK-UCL PMID:22542597 MGI:5430247 NCBI chrNW_004624774:9,363,156...9,391,939
Ensembl chrNW_004624774:9,363,908...9,391,986 		JBrowse link
G Dlx1 distal-less homeobox 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:11163262) MGI
Ensembl		 PMID:11163262 GO_REF:0000107 NCBI chrNW_004624787:9,514,170...9,519,309
Ensembl chrNW_004624787:9,514,573...9,519,724 		JBrowse link
G Dlx2 distal-less homeobox 2 acts_upstream_of_or_within ISO (PMID:11163262) MGI PMID:11163262 NCBI chrNW_004624787:9,528,942...9,532,252
Ensembl chrNW_004624787:9,530,034...9,533,109 		JBrowse link
G Lhx5 LIM homeobox 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10325223) Ensembl
MGI		 PMID:10325223 GO_REF:0000107 NCBI chrNW_004624747:19,088,372...19,097,406
Ensembl chrNW_004624747:19,088,311...19,097,080 		JBrowse link
G Lhx8 LIM homeobox 8 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15978004) Ensembl
MGI		 PMID:15978004 GO_REF:0000107 NCBI chrNW_004624742:21,638,213...21,662,979
Ensembl chrNW_004624742:21,638,856...21,662,776 		JBrowse link
G Nkx2-1 NK2 homeobox 1 acts_upstream_of_or_within ISO (PMID:11163262) MGI PMID:11163262 NCBI chrNW_004624838:300,902...304,944
Ensembl chrNW_004624838:300,458...305,517 		JBrowse link
G Otp orthopedia homeobox involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17481897) Ensembl
MGI		 PMID:17481897 GO_REF:0000107 NCBI chrNW_004624869:2,089,886...2,098,061
Ensembl chrNW_004624869:2,089,873...2,098,064 		JBrowse link
G Phlda1 pleckstrin homology like domain family A member 1 ISO RGD PMID:10428057 RGD:70034 NCBI chrNW_004624750:22,012,245...22,018,338 JBrowse link
G Pou3f4 POU class 3 homeobox 4 acts_upstream_of_or_within ISO (PMID:9889200) MGI PMID:9889200 NCBI chrNW_004624852:5,036,585...5,040,160
Ensembl chrNW_004624852:5,037,373...5,040,139 		JBrowse link
G Sox1 SRY-box transcription factor 1 acts_upstream_of_or_within ISO (PMID:15882093) MGI PMID:15882093 NCBI chrNW_004624793:1,341,643...1,648,168
Ensembl chrNW_004624793:1,370,243...1,371,358 		JBrowse link
G Sox2 SRY-box transcription factor 2 acts_upstream_of_or_within ISO (PMID:15240551) MGI PMID:15240551 NCBI chrNW_004624730:59,570,879...59,573,001
Ensembl chrNW_004624730:59,570,915...59,571,871 		JBrowse link
forebrain neuron fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lhx6 LIM homeobox 6 acts_upstream_of_or_within ISO (PMID:18339674) MGI PMID:18339674 NCBI chrNW_004624760:13,066,632...13,092,006
Ensembl chrNW_004624760:13,066,703...13,097,468 		JBrowse link
G Nkx2-1 NK2 homeobox 1 acts_upstream_of_or_within ISO (PMID:18339674) MGI PMID:18339674 NCBI chrNW_004624838:300,902...304,944
Ensembl chrNW_004624838:300,458...305,517 		JBrowse link
G Tfap2c transcription factor AP-2 gamma acts_upstream_of_or_within ISO (PMID:19749747) MGI PMID:19749747 NCBI chrNW_004624741:23,286,526...23,299,318
Ensembl chrNW_004624741:23,290,519...23,298,121 		JBrowse link
forebrain radial glial cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (PMID:9232833) MGI PMID:9232833 NCBI chrNW_004624740:18,961,395...19,238,760
Ensembl chrNW_004624740:18,975,596...19,235,900 		JBrowse link
G Hes1 hes family bHLH transcription factor 1 involved_in ISO PMID:11399758 UniProt PMID:11399758 RGD:8554692 NCBI chrNW_004624730:63,563,848...63,566,303
Ensembl chrNW_004624730:63,563,754...63,566,781 		JBrowse link
G Hes5 hes family bHLH transcription factor 5 involved_in ISO PMID:11399758 UniProt PMID:11399758 RGD:8554692 NCBI chrNW_004624818:7,516,279...7,517,654
Ensembl chrNW_004624818:7,516,189...7,518,734 		JBrowse link
G Lef1 lymphoid enhancer binding factor 1 acts_upstream_of_or_within ISO (PMID:14715945) MGI PMID:14715945 NCBI chrNW_004624830:1,320,034...1,422,774
Ensembl chrNW_004624830:1,321,387...1,424,389 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:14715945) MGI PMID:14715945 NCBI chrNW_004624752:25,605,444...25,756,573
Ensembl chrNW_004624752:25,605,302...25,751,893 		JBrowse link
G Mettl14 methyltransferase 14, N6-adenosine-methyltransferase non-catalytic subunit involved_in IEA UniProt GO_REF:0000104 NCBI chrNW_004624867:5,508,847...5,533,395
Ensembl chrNW_004624867:5,508,886...5,533,395 		JBrowse link
G Mettl3 methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit involved_in ISO (MGI:5927282|PMID:28965759) UniProt PMID:28965759 MGI:5927282 NCBI chrNW_004624825:7,513,481...7,527,716
Ensembl chrNW_004624825:7,513,481...7,527,695 		JBrowse link
G Nfix nuclear factor I X involved_in ISO (PMID:27965439) MGI PMID:27965439 NCBI chrNW_004624901:551,277...645,435
Ensembl chrNW_004624901:550,931...646,417 		JBrowse link
G Rhoa ras homolog family member A acts_upstream_of_or_within ISO (PMID:22405202) MGI PMID:22405202 NCBI chrNW_004624730:3,316,122...3,361,820 JBrowse link
forebrain regionalization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lhx1 LIM homeobox 1 acts_upstream_of_or_within ISO (PMID:10529425) MGI PMID:10529425 NCBI chrNW_004624871:3,954,490...3,961,861
Ensembl chrNW_004624871:3,954,504...3,963,033 		JBrowse link
G Pgap1 post-GPI attachment to proteins inositol deacylase 1 acts_upstream_of_or_within ISO (PMID:10529425) MGI PMID:10529425 NCBI chrNW_004624889:3,174,626...3,256,555
Ensembl chrNW_004624889:3,174,739...3,244,315 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO (PMID:24528677) MGI PMID:24528677 NCBI chrNW_004624800:2,202,986...2,215,309
Ensembl chrNW_004624800:2,203,393...2,212,068 		JBrowse link
G Wnt2b Wnt family member 2B involved_in ISO (PMID:15164427)
(MGI:4821941|PMID:15164427)		 UniProt PMID:15164427 MGI:4821941 NCBI chrNW_004624772:8,305,042...8,319,882
Ensembl chrNW_004624772:8,304,708...8,319,349 		JBrowse link
G Wnt7b Wnt family member 7B involved_in ISO (MGI:4821941|PMID:15164427)
(PMID:15164427)		 UniProt PMID:15164427 MGI:4821941 NCBI chrNW_004624752:3,818,073...3,856,602
Ensembl chrNW_004624752:3,818,025...3,857,027 		JBrowse link
forebrain ventricular zone progenitor cell division term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dixdc1 DIX domain containing 1 involved_in ISO (MGI:4821185|PMID:20624590) DFLAT PMID:20624590 MGI:4821185 NCBI chrNW_004624784:7,093,457...7,178,448
Ensembl chrNW_004624784:7,094,736...7,175,072 		JBrowse link
G Pou3f2 POU class 3 homeobox 2 acts_upstream_of_or_within ISO (PMID:12130536) MGI PMID:12130536 NCBI chrNW_004624810:6,283,443...6,287,594
Ensembl chrNW_004624810:6,286,066...6,287,397 		JBrowse link
G Pou3f3 POU class 3 homeobox 3 acts_upstream_of_or_within ISO (PMID:12130536) MGI PMID:12130536 NCBI chrNW_004624749:9,081,906...9,087,318 JBrowse link
globus pallidus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arx aristaless related homeobox acts_upstream_of_or_within ISO (PMID:17460091) MGI PMID:17460091 NCBI chrNW_004624897:1,279,138...1,303,210 JBrowse link
G Kcnc1 potassium voltage-gated channel subfamily C member 1 ISO RGD PMID:10482766 RGD:9685780 NCBI chrNW_004624766:9,360,038...9,400,106
Ensembl chrNW_004624766:9,359,511...9,400,106 		JBrowse link
G Kcnc2 potassium voltage-gated channel subfamily C member 2 ISO RGD PMID:10482766 RGD:9685780 NCBI chrNW_004624750:22,807,234...22,996,614
Ensembl chrNW_004624750:22,807,370...22,996,753 		JBrowse link
G Nkx2-1 NK2 homeobox 1 involved_in
acts_upstream_of_or_within		 ISO (PMID:11854319)
(PMID:20181579)		 UniProt
MGI		 PMID:11854319 PMID:20181579 NCBI chrNW_004624838:300,902...304,944
Ensembl chrNW_004624838:300,458...305,517 		JBrowse link
gonadotrophin-releasing hormone neuronal migration to the hypothalamus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ndnf neuron derived neurotrophic factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624777:1,036,389...1,072,271
Ensembl chrNW_004624777:1,035,991...1,072,996 		JBrowse link
G Nrp1 neuropilin 1 involved_in ISO (MGI:4850173|PMID:21059704) BHF-UCL PMID:21059704 MGI:4850173 NCBI chrNW_004624805:8,438,485...8,574,845
Ensembl chrNW_004624805:8,438,498...8,574,508 		JBrowse link
G Nrp2 neuropilin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624765:10,372,172...10,484,766
Ensembl chrNW_004624765:10,372,099...10,484,963 		JBrowse link
G Plxna1 plexin A1 involved_in ISO (MGI:6389759|PMID:31690636) ARUK-UCL PMID:31690636 MGI:6389759 NCBI chrNW_004624900:2,779,008...2,825,263
Ensembl chrNW_004624900:2,784,106...2,825,360 		JBrowse link
G Plxna3 plexin A3 involved_in ISO (MGI:6389759|PMID:31690636) ARUK-UCL PMID:31690636 MGI:6389759 NCBI chrNW_004624946:924,956...939,483
Ensembl chrNW_004624946:926,521...939,483 		JBrowse link
G Sema3a semaphorin 3A involved_in ISO (MGI:4850173|PMID:21059704) BHF-UCL PMID:21059704 MGI:4850173 NCBI chrNW_004624739:32,104,014...32,426,980
Ensembl chrNW_004624739:32,105,824...32,309,271 		JBrowse link
G Sema3e semaphorin 3E involved_in ISO (PMID:25985275) ARUK-UCL PMID:25985275 NCBI chrNW_004624739:31,606,128...31,851,624
Ensembl chrNW_004624739:31,608,501...31,716,640 		JBrowse link
habenula development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nr4a2 nuclear receptor subfamily 4 group A member 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19906978) Ensembl
MGI		 PMID:19906978 GO_REF:0000107 NCBI chrNW_004624732:9,572,160...9,589,624
Ensembl chrNW_004624732:9,581,779...9,589,942 		JBrowse link
G Pax6 paired box 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24528677) Ensembl
MGI		 PMID:24528677 GO_REF:0000107 NCBI chrNW_004624766:20,536,581...20,554,589
Ensembl chrNW_004624766:20,536,233...20,554,759 		JBrowse link
G Pou4f1 POU class 4 homeobox 1 acts_upstream_of_or_within ISO (PMID:19906978) MGI PMID:19906978 NCBI chrNW_004624751:21,812,567...21,817,837
Ensembl chrNW_004624751:21,812,850...21,814,747 		JBrowse link
hippocampus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1c activin A receptor type 1C ISO RGD PMID:8940033 RGD:631880 NCBI chrNW_004624732:8,130,970...8,247,528
Ensembl chrNW_004624732:8,130,962...8,247,289 		JBrowse link
G Akap5 A-kinase anchoring protein 5 ISO RGD PMID:19535604 RGD:2313144 NCBI chrNW_004624734:36,550,020...36,555,142
Ensembl chrNW_004624734:36,550,447...36,551,742 		JBrowse link
G Alk ALK receptor tyrosine kinase acts_upstream_of_or_within ISO (PMID:17487225) MGI PMID:17487225 NCBI chrNW_004624738:11,094,699...12,010,349
Ensembl chrNW_004624738:11,095,134...11,288,891 		JBrowse link
G Anxa3 annexin A3 ISO RGD PMID:18493952 RGD:2302825 NCBI chrNW_004624757:12,442,577...12,505,367
Ensembl chrNW_004624757:12,442,577...12,502,903 		JBrowse link
G Atg16l1 autophagy related 16 like 1 acts_upstream_of_or_within ISO (PMID:29078390) MGI PMID:29078390 NCBI chrNW_004624843:5,797,725...5,838,768
Ensembl chrNW_004624843:5,805,069...5,838,741 		JBrowse link
G Atp2b4 ATPase plasma membrane Ca2+ transporting 4 ISO RGD PMID:16200642 RGD:6906893 NCBI chrNW_004624807:7,201,924...7,292,010
Ensembl chrNW_004624807:7,201,777...7,250,386 		JBrowse link
G Bbs1 Bardet-Biedl syndrome 1 acts_upstream_of_or_within ISO (PMID:18032602) MGI PMID:18032602 NCBI chrNW_004624767:19,875,597...19,893,652
Ensembl chrNW_004624767:19,875,535...19,893,694 		JBrowse link
G Bbs2 Bardet-Biedl syndrome 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18032602) Ensembl
MGI		 PMID:18032602 GO_REF:0000107 NCBI chrNW_004624757:55,861...88,703
Ensembl chrNW_004624757:55,811...88,562 		JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 acts_upstream_of_or_within ISO (PMID:18032602), (PMID:24695551) MGI PMID:18032602 PMID:24695551 NCBI chrNW_004624781:1,502,069...1,553,101
Ensembl chrNW_004624781:1,503,816...1,538,755 		JBrowse link
G Bcan brevican acts_upstream_of_or_within ISO (PMID:12370289) MGI PMID:12370289 NCBI chrNW_004624885:1,816,591...1,829,971
Ensembl chrNW_004624885:1,820,105...1,832,510 		JBrowse link
G Cdk5 cyclin dependent kinase 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11517264) Ensembl
MGI		 PMID:11517264 GO_REF:0000107 NCBI chrNW_004624800:5,562,468...5,566,458
Ensembl chrNW_004624800:5,562,462...5,569,937 		JBrowse link
G Cdk5r1 cyclin dependent kinase 5 regulatory subunit 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11517264) Ensembl
MGI		 PMID:11517264 GO_REF:0000107 NCBI chrNW_004624875:538,752...542,874
Ensembl chrNW_004624875:538,790...543,044 		JBrowse link
G Cdk5r2 cyclin dependent kinase 5 regulatory subunit 2 acts_upstream_of_or_within ISO (PMID:11517264) MGI PMID:11517264 NCBI chrNW_004624823:6,053,469...6,054,748
Ensembl chrNW_004624823:6,053,550...6,054,659 		JBrowse link
G Cfl1 cofilin 1 ISO RGD PMID:27073215 RGD:11568695 NCBI chrNW_004624767:20,574,884...20,578,413
Ensembl chrNW_004624767:20,574,966...20,579,796 		JBrowse link
G Chrna2 cholinergic receptor nicotinic alpha 2 subunit part_of ISO RGD PMID:17046198 RGD:152995358 NCBI chrNW_004624758:22,182,468...22,200,076
Ensembl chrNW_004624758:22,182,951...22,200,063 		JBrowse link
G Chrna5 cholinergic receptor nicotinic alpha 5 subunit ISO RGD PMID:15558717 RGD:150530459 NCBI chrNW_004624894:2,357,193...2,400,699 JBrowse link
G Crk CRK proto-oncogene, adaptor protein acts_upstream_of_or_within ISO (PMID:19074029) MGI PMID:19074029 NCBI chrNW_004624786:4,153,783...4,177,611
Ensembl chrNW_004624786:4,153,889...4,177,716 		JBrowse link
G Crkl CRK like proto-oncogene, adaptor protein acts_upstream_of_or_within ISO (PMID:19074029) MGI PMID:19074029 NCBI chrNW_004624945:734,532...767,184
Ensembl chrNW_004624945:734,532...767,168 		JBrowse link
G Dab1 DAB adaptor protein 1 acts_upstream_of_or_within ISO (PMID:18477607) MGI PMID:18477607 NCBI chrNW_004624862:2,053,637...3,159,712
Ensembl chrNW_004624862:2,892,851...3,144,194 		JBrowse link
G Dclk2 doublecortin like kinase 2 acts_upstream_of_or_within ISO (PMID:19342486) MGI PMID:19342486 NCBI chrNW_004624858:1,638,145...1,809,605
Ensembl chrNW_004624858:1,637,986...1,788,172 		JBrowse link
G Dcx doublecortin acts_upstream_of_or_within ISO (PMID:19342486) MGI PMID:19342486 NCBI chrNW_004624803:4,168,556...4,304,642
Ensembl chrNW_004624803:4,168,556...4,299,979 		JBrowse link
G Dlx1 distal-less homeobox 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:11163262) MGI
Ensembl		 PMID:11163262 GO_REF:0000107 NCBI chrNW_004624787:9,514,170...9,519,309
Ensembl chrNW_004624787:9,514,573...9,519,724 		JBrowse link
G Dlx2 distal-less homeobox 2 acts_upstream_of_or_within ISO (PMID:11163262) MGI PMID:11163262 NCBI chrNW_004624787:9,528,942...9,532,252
Ensembl chrNW_004624787:9,530,034...9,533,109 		JBrowse link
G Drd1 dopamine receptor D1 acts_upstream_of_or_within ISO (PMID:17360497) MGI PMID:17360497 NCBI chrNW_004624733:14,517,540...14,522,173
Ensembl chrNW_004624733:14,518,146...14,520,905 		JBrowse link
G Eif2b2 eukaryotic translation initiation factor 2B subunit beta ISO RGD PMID:12850562 RGD:11041879 NCBI chrNW_004624734:26,682,521...26,688,490
Ensembl chrNW_004624734:26,682,521...26,688,559 		JBrowse link
G Eif2b3 eukaryotic translation initiation factor 2B subunit gamma ISO RGD PMID:12850562 RGD:11041879 NCBI chrNW_004624906:733,148...882,690
Ensembl chrNW_004624906:733,146...892,362 		JBrowse link
G Eif2b4 eukaryotic translation initiation factor 2B subunit delta ISO RGD PMID:12850562 RGD:11041879 NCBI chrNW_004624738:9,438,484...9,443,931
Ensembl chrNW_004624738:9,437,554...9,443,747 		JBrowse link
G Eif2b5 eukaryotic translation initiation factor 2B subunit epsilon ISO RGD PMID:12850562 RGD:11041879 NCBI chrNW_004624730:72,417,069...72,428,194
Ensembl chrNW_004624730:72,417,856...72,428,093 		JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 ISO RGD PMID:18565716 RGD:13204724 NCBI chrNW_004624753:5,918,005...5,983,480
Ensembl chrNW_004624753:5,917,689...5,982,308 		JBrowse link
G Epha5 EPH receptor A5 involved_in ISO (MGI:2384261|PMID:12124402) UniProt PMID:12124402 MGI:2384261 NCBI chrNW_004624761:3,693,462...4,050,426
Ensembl chrNW_004624761:3,693,540...4,048,953 		JBrowse link
G Ezh1 enhancer of zeste 1 polycomb repressive complex 2 subunit ISO RGD PMID:23932971 RGD:9587811 NCBI chrNW_004624795:1,454,361...1,470,079 JBrowse link
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit ISO RGD PMID:23932971 RGD:9587811 NCBI chrNW_004624800:6,781,848...6,874,221
Ensembl chrNW_004624800:6,802,901...6,874,196 		JBrowse link
G Fez1 fasciculation and elongation protein zeta 1 ISO RGD PMID:14992819 RGD:13208825 NCBI chrNW_004624927:1,470,218...1,512,780
Ensembl chrNW_004624927:1,469,025...1,512,790 		JBrowse link
G Fgf13 fibroblast growth factor 13 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624808:7,577,422...8,091,216
Ensembl chrNW_004624808:7,578,286...8,091,811 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (PMID:22235033) MGI PMID:22235033 NCBI chrNW_004624740:18,961,395...19,238,760
Ensembl chrNW_004624740:18,975,596...19,235,900 		JBrowse link
G Grin2a glutamate ionotropic receptor NMDA type subunit 2A ISO RGD PMID:19535712 RGD:2325978 NCBI chrNW_004624824:7,128,169...7,513,360
Ensembl chrNW_004624824:7,137,909...7,507,910 		JBrowse link
G Grin2b glutamate ionotropic receptor NMDA type subunit 2B ISO RGD PMID:19535712 RGD:2325978 NCBI chrNW_004624752:24,008,520...24,480,834
Ensembl chrNW_004624752:24,135,487...24,459,288 		JBrowse link
G Gsk3b glycogen synthase kinase 3 beta involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624731:28,178,647...28,368,784
Ensembl chrNW_004624731:28,178,628...28,366,420 		JBrowse link
G Hdac1 histone deacetylase 1 acts_upstream_of_or_within ISO (PMID:19380719) MGI PMID:19380719 NCBI chrNW_004624764:15,510,655...15,552,020
Ensembl chrNW_004624764:15,510,866...15,552,025 		JBrowse link
G Hdac2 histone deacetylase 2 acts_upstream_of_or_within ISO (PMID:19380719) MGI PMID:19380719 NCBI chrNW_004624856:4,834,197...4,861,546
Ensembl chrNW_004624856:4,834,217...4,861,592 		JBrowse link
G Hnrnpk heterogeneous nuclear ribonucleoprotein K ISO RGD PMID:22102872 RGD:10002783 NCBI chrNW_004624809:7,538,568...7,548,272 JBrowse link
G Hsd17b3 hydroxysteroid 17-beta dehydrogenase 3 ISO RGD PMID:21047951 RGD:4145527 NCBI chrNW_004624753:17,770,326...17,832,560
Ensembl chrNW_004624753:17,789,789...17,832,747 		JBrowse link
G Hsd17b7 hydroxysteroid 17-beta dehydrogenase 7 ISO RGD PMID:21047951 RGD:4145527 NCBI chrNW_004624826:1,260,133...1,287,565
Ensembl chrNW_004624826:1,260,223...1,283,741 		JBrowse link
G Htr5a 5-hydroxytryptamine receptor 5A ISO RGD PMID:16572590 RGD:2316993 NCBI chrNW_004624800:2,616,861...2,625,907
Ensembl chrNW_004624800:2,618,973...2,625,559 		JBrowse link
G Id4 inhibitor of DNA binding 4, HLH protein acts_upstream_of_or_within ISO (PMID:15469968) MGI PMID:15469968 NCBI chrNW_004624756:6,816,364...6,819,144
Ensembl chrNW_004624756:6,814,842...6,819,578 		JBrowse link
G Igf1r insulin like growth factor 1 receptor ISO RGD PMID:22042446 RGD:10403040 NCBI chrNW_004624768:5,396,027...5,688,435
Ensembl chrNW_004624768:5,396,156...5,681,809 		JBrowse link
G Insr insulin receptor ISO RGD PMID:22042446 RGD:10403040 NCBI chrNW_004624828:345,135...485,856
Ensembl chrNW_004624828:345,135...486,184 		JBrowse link
G Kcna1 potassium voltage-gated channel subfamily A member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624860:1,915,108...1,923,071
Ensembl chrNW_004624860:1,915,344...1,923,062 		JBrowse link
G Kcnq2 potassium voltage-gated channel subfamily Q member 2 acts_upstream_of_or_within ISO (PMID:15608631) MGI PMID:15608631 NCBI chrNW_004624741:29,089,894...29,143,681
Ensembl chrNW_004624741:29,091,119...29,143,589 		JBrowse link
G Kdm6b lysine demethylase 6B ISO RGD PMID:23932971 RGD:9587811 NCBI chrNW_004624786:10,413,670...10,435,118
Ensembl chrNW_004624786:10,425,816...10,433,806 		JBrowse link
G Kif14 kinesin family member 14 involved_in ISO (MGI:5485315|PMID:23308235) UniProt PMID:23308235 MGI:5485315 NCBI chrNW_004624807:10,093,518...10,144,484
Ensembl chrNW_004624807:10,092,934...10,143,399 		JBrowse link
G Kif5a kinesin family member 5A ISO RGD PMID:9349526 RGD:12792964 NCBI chrNW_004624802:10,375,132...10,409,575
Ensembl chrNW_004624802:10,375,774...10,409,566 		JBrowse link
G Kif5b kinesin family member 5B ISO RGD PMID:9349526 RGD:12792964 NCBI chrNW_004624805:4,464,538...4,514,784
Ensembl chrNW_004624805:4,465,235...4,514,870 		JBrowse link
G Kirrel3 kirre like nephrin family adhesion molecule 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624812:561,290...1,158,012
Ensembl chrNW_004624812:562,308...1,154,934 		JBrowse link
G Lef1 lymphoid enhancer binding factor 1 acts_upstream_of_or_within ISO (PMID:10631168) MGI PMID:10631168 NCBI chrNW_004624830:1,320,034...1,422,774
Ensembl chrNW_004624830:1,321,387...1,424,389 		JBrowse link
G Lhx5 LIM homeobox 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10325223) Ensembl
MGI		 PMID:10325223 GO_REF:0000107 NCBI chrNW_004624747:19,088,372...19,097,406
Ensembl chrNW_004624747:19,088,311...19,097,080 		JBrowse link
G Lmx1a LIM homeobox transcription factor 1 alpha involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:1638738) Ensembl
MGI		 PMID:1638738 GO_REF:0000107 NCBI chrNW_004624826:3,541,291...3,689,039
Ensembl chrNW_004624826:3,543,191...3,689,062 		JBrowse link
G LOC101702005 aromatase ISO RGD PMID:21047951 RGD:4145527 NCBI chrNW_004624731:9,053,644...9,100,212
Ensembl chrNW_004624731:9,053,803...9,100,212 		JBrowse link
G LOC101704598 cholesterol side-chain cleavage enzyme, mitochondrial ISO RGD PMID:21047951 RGD:4145527 NCBI chrNW_004624781:288,594...298,876
Ensembl chrNW_004624781:288,594...300,429 		JBrowse link
G LOC101712532 cytochrome b-c1 complex subunit 8 involved_in ISO (MGI:3662936|PMID:16901643) UniProt PMID:16901643 MGI:3662936 NCBI chrNW_004624733:39,233,359...39,235,008
Ensembl chrNW_004624733:39,233,359...39,234,945 		JBrowse link
G LOC101715424 tubulin alpha-1B chain-like involved_in ISO (PMID:17218254) MGI PMID:17218254 NCBI chrNW_004624816:3,001,252...3,006,166 JBrowse link
G LOC101726496 steroid 17-alpha-hydroxylase/17,20 lyase ISO RGD PMID:21047951 RGD:4145527 NCBI chrNW_004624831:2,155,851...2,166,621
Ensembl chrNW_004624831:2,157,048...2,166,539 		JBrowse link
G Lrp8 LDL receptor related protein 8 acts_upstream_of_or_within ISO (PMID:17330141) MGI PMID:17330141 NCBI chrNW_004624934:1,145,982...1,220,177
Ensembl chrNW_004624934:1,146,000...1,215,922 		JBrowse link
G Mas1 MAS1 proto-oncogene, G protein-coupled receptor ISO RGD PMID:1521325 RGD:2316795 NCBI chrNW_004624855:2,968,111...3,008,728
Ensembl chrNW_004624855:2,969,444...2,970,421 		JBrowse link
G Mdk midkine involved_in ISO (MGI:2178952|PMID:10096022) DFLAT PMID:10096022 MGI:2178952 NCBI chrNW_004624767:2,171,096...2,173,436
Ensembl chrNW_004624767:2,171,096...2,173,512 		JBrowse link
G Mecp2 methyl-CpG binding protein 2 ISO RGD PMID:14751287 RGD:12743658 NCBI chrNW_004624946:620,581...685,339
Ensembl chrNW_004624946:628,284...685,246 		JBrowse link
G Mfsd2a MFSD2 lysolipid transporter A, lysophospholipid involved_in ISO (MGI:5571501|PMID:24828044) BHF-UCL PMID:24828044 MGI:5571501 NCBI chrNW_004624764:22,422,520...22,435,332
Ensembl chrNW_004624764:22,422,423...22,435,416 		JBrowse link
G Mkks MKKS centrosomal shuttling protein acts_upstream_of_or_within ISO (PMID:18032602) MGI PMID:18032602 NCBI chrNW_004624741:11,323,935...11,447,669
Ensembl chrNW_004624741:11,425,368...11,435,706 		JBrowse link
G Ncoa1 nuclear receptor coactivator 1 ISO RGD PMID:22085911 RGD:5688137 NCBI chrNW_004624738:6,770,745...7,054,616
Ensembl chrNW_004624738:6,943,726...7,054,454 		JBrowse link
G Nefh neurofilament heavy chain ISO RGD PMID:14620872 RGD:9743946 NCBI chrNW_004624747:5,806,576...5,816,158
Ensembl chrNW_004624747:5,806,645...5,815,554 		JBrowse link
G Nefl neurofilament light chain ISO RGD PMID:14620872 RGD:9743946 NCBI chrNW_004624758:20,063,109...20,068,459
Ensembl chrNW_004624758:20,062,685...20,068,609 		JBrowse link
G Nefm neurofilament medium chain ISO RGD PMID:14620872 RGD:9743946 NCBI chrNW_004624758:20,030,450...20,036,105 JBrowse link
G Nf2 NF2, moesin-ezrin-radixin like (MERLIN) tumor suppressor acts_upstream_of_or_within ISO (PMID:23863479) MGI PMID:23863479 NCBI chrNW_004624747:5,923,827...6,011,276
Ensembl chrNW_004624747:5,923,834...6,011,939 		JBrowse link
G Nfix nuclear factor I X involved_in ISO (PMID:18477394), (PMID:23042739), (PMID:23776487), (PMID:23964093) MGI PMID:18477394 PMID:23042739 PMID:23776487 PMID:23964093 NCBI chrNW_004624901:551,277...645,435
Ensembl chrNW_004624901:550,931...646,417 		JBrowse link
G Nkx2-1 NK2 homeobox 1 acts_upstream_of_or_within ISO (PMID:11163262) MGI PMID:11163262 NCBI chrNW_004624838:300,902...304,944
Ensembl chrNW_004624838:300,458...305,517 		JBrowse link
G Nog noggin ISO RGD PMID:15171992 RGD:10416525 NCBI chrNW_004624795:11,696,102...11,697,367
Ensembl chrNW_004624795:11,696,353...11,697,051 		JBrowse link
G Nr4a3 nuclear receptor subfamily 4 group A member 3 acts_upstream_of_or_within ISO (PMID:15456880) MGI PMID:15456880 NCBI chrNW_004624825:1,098,915...1,141,373
Ensembl chrNW_004624825:1,097,432...1,141,446 		JBrowse link
G Ogdh oxoglutarate dehydrogenase involved_in ISO (MGI:3662936|PMID:16901643) UniProt PMID:16901643 MGI:3662936 NCBI chrNW_004624740:7,481,719...7,549,809
Ensembl chrNW_004624740:7,482,314...7,549,417 		JBrowse link
G Pafah1b1 platelet activating factor acetylhydrolase 1b regulatory subunit 1 acts_upstream_of_or_within ISO (PMID:17330141)
(PMID:10729324)		 MGI PMID:10729324 PMID:17330141 NCBI chrNW_004624786:5,223,890...5,306,033
Ensembl chrNW_004624786:5,224,982...5,302,436 		JBrowse link
G Pebp1 phosphatidylethanolamine binding protein 1 ISO RGD PMID:18493952 RGD:2302825 NCBI chrNW_004624747:15,340,020...15,346,960
Ensembl chrNW_004624747:15,339,844...15,346,970 		JBrowse link
G Phlpp1 PH domain and leucine rich repeat protein phosphatase 1 ISO RGD PMID:20819118 RGD:8693633 NCBI chrNW_004624792:8,448,245...8,680,845
Ensembl chrNW_004624792:8,448,013...8,681,053 		JBrowse link
G Phlpp2 PH domain and leucine rich repeat protein phosphatase 2 ISO RGD PMID:20819118 RGD:8693633 NCBI chrNW_004624746:13,917,070...13,994,212
Ensembl chrNW_004624746:13,919,557...13,994,182 		JBrowse link
G Plxna3 plexin A3 acts_upstream_of_or_within ISO (PMID:11683995) MGI PMID:11683995 NCBI chrNW_004624946:924,956...939,483
Ensembl chrNW_004624946:926,521...939,483 		JBrowse link
G Ppp1r9b protein phosphatase 1 regulatory subunit 9B ISO RGD PMID:21123436 RGD:10043818 NCBI chrNW_004624795:6,124,273...6,137,776
Ensembl chrNW_004624795:6,124,159...6,137,955 		JBrowse link
G Ptprs protein tyrosine phosphatase receptor type S acts_upstream_of_or_within ISO (PMID:15842738) MGI PMID:15842738 NCBI chrNW_004624828:4,688,555...4,764,805
Ensembl chrNW_004624828:4,716,249...4,764,614 		JBrowse link
G Ptprz1 protein tyrosine phosphatase receptor type Z1 ISO RGD PMID:10906718 RGD:9589828 NCBI chrNW_004624783:13,911,525...14,105,403
Ensembl chrNW_004624783:13,912,332...14,105,292 		JBrowse link
G Ran RAN, member RAS oncogene family ISO RGD PMID:18493952 RGD:2302825 NCBI chrNW_004624747:27,287,510...27,290,082
Ensembl chrNW_004624747:27,285,934...27,290,667 		JBrowse link
G Rara retinoic acid receptor alpha ISO RGD PMID:18619947 RGD:8693612 NCBI chrNW_004624795:2,935,432...2,975,226
Ensembl chrNW_004624795:2,934,731...2,967,232 		JBrowse link
G Reln reelin involved_in ISO (MGI:3765383|PMID:17229826) BHF-UCL PMID:17229826 MGI:3765383 NCBI chrNW_004624739:25,472,626...25,918,064
Ensembl chrNW_004624739:25,472,561...25,918,167 		JBrowse link
G Sct secretin involved_in ISO (MGI:3814626|PMID:18534766) UniProt PMID:18534766 MGI:3814626 NCBI chrNW_004624766:21,841,994...21,842,754
Ensembl chrNW_004624766:21,842,014...21,842,683 		JBrowse link
G Sema6b semaphorin 6B involved_in ISO (MGI:4454564|PMID:20484647) UniProt PMID:20484647 MGI:4454564 NCBI chrNW_004624828:5,170,745...5,193,568
Ensembl chrNW_004624828:5,182,812...5,192,486 		JBrowse link
G Slc17a6 solute carrier family 17 member 6 ISO RGD PMID:18502731 RGD:9999204 NCBI chrNW_004624766:13,335,186...13,376,634
Ensembl chrNW_004624766:13,335,130...13,376,712 		JBrowse link
G Slc32a1 solute carrier family 32 member 1 ISO RGD PMID:18502731 RGD:9999204 NCBI chrNW_004624842:949,907...955,002
Ensembl chrNW_004624842:946,211...954,768 		JBrowse link
G Srd5a1 steroid 5 alpha-reductase 1 ISO RGD PMID:8770891 RGD:4892048 NCBI chrNW_004624751:4,309,518...4,335,332
Ensembl chrNW_004624751:4,309,447...4,336,083 		JBrowse link
G Srd5a2 steroid 5 alpha-reductase 2 ISO RGD PMID:21047951 RGD:4145527 NCBI chrNW_004624738:13,254,998...13,321,360
Ensembl chrNW_004624738:13,253,729...13,321,448 		JBrowse link
G Srf serum response factor acts_upstream_of_or_within ISO (PMID:15837932) MGI PMID:15837932 NCBI chrNW_004624754:16,371,995...16,381,287 JBrowse link
G Tent2 terminal nucleotidyltransferase 2 ISO RGD PMID:24074826 RGD:9684936 NCBI chrNW_004624869:4,089,253...4,148,455
Ensembl chrNW_004624869:4,089,282...4,147,211 		JBrowse link
G Tp73 tumor protein p73 acts_upstream_of_or_within ISO (PMID:10716451) MGI PMID:10716451 NCBI chrNW_004624818:6,775,588...6,817,187
Ensembl chrNW_004624818:6,775,599...6,809,289 		JBrowse link
G Tsc1 TSC complex subunit 1 acts_upstream_of_or_within ISO (PMID:17522300) MGI PMID:17522300 NCBI chrNW_004624760:3,479,028...3,536,612
Ensembl chrNW_004624760:3,498,692...3,532,011 		JBrowse link
G Tsku tsukushi, small leucine rich proteoglycan involved_in ISO (MGI:6478862|PMID:31983064) UniProt PMID:31983064 MGI:6478862 NCBI chrNW_004624817:364,543...379,742
Ensembl chrNW_004624817:366,101...373,034 		JBrowse link
G Uba6 ubiquitin like modifier activating enzyme 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23499007) Ensembl
MGI		 PMID:23499007 GO_REF:0000107 NCBI chrNW_004624761:1,262,172...1,351,606
Ensembl chrNW_004624761:1,262,345...1,349,964 		JBrowse link
G Usp9x ubiquitin specific peptidase 9 X-linked acts_upstream_of_or_within ISO (PMID:23861879) MGI PMID:23861879 NCBI chrNW_004624762:14,403,361...14,527,854
Ensembl chrNW_004624762:14,405,560...14,527,639 		JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within ISO (PMID:10631167) MGI PMID:10631167 NCBI chrNW_004624937:816,752...845,866
Ensembl chrNW_004624937:816,759...845,458 		JBrowse link
G Xrcc1 X-ray repair cross complementing 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:19633665) MGI
Ensembl		 PMID:19633665 GO_REF:0000107 NCBI chrNW_004624907:1,087,611...1,113,275
Ensembl chrNW_004624907:1,087,611...1,113,266 		JBrowse link
G Xrn2 5'-3' exoribonuclease 2 ISO RGD PMID:23933240 RGD:9684963 NCBI chrNW_004624741:21,691,099...21,768,267
Ensembl chrNW_004624741:21,691,199...21,767,790 		JBrowse link
G Ywhae tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon acts_upstream_of_or_within ISO (PMID:12796778) MGI PMID:12796778 NCBI chrNW_004624786:4,080,650...4,135,200
Ensembl chrNW_004624786:4,080,427...4,135,459 		JBrowse link
G Zbtb18 zinc finger and BTB domain containing 18 acts_upstream_of_or_within ISO (PMID:19409883) MGI PMID:19409883 NCBI chrNW_004624771:15,425,610...15,432,012
Ensembl chrNW_004624771:15,425,604...15,430,542 		JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 acts_upstream_of_or_within ISO (PMID:17644613) MGI PMID:17644613 NCBI chrNW_004624732:44,097,348...44,226,701
Ensembl chrNW_004624732:44,101,613...44,139,997 		JBrowse link
G Zic1 Zic family member 1 involved_in ISO (PMID:17507568) MGI PMID:17507568 NCBI chrNW_004624730:24,440,717...24,444,663
Ensembl chrNW_004624730:24,440,192...24,448,421 		JBrowse link
G Zic3 Zic family member 3 involved_in ISO (PMID:17507568) MGI PMID:17507568 NCBI chrNW_004624808:9,201,025...9,212,192
Ensembl chrNW_004624808:9,200,952...9,212,093 		JBrowse link
hypophysis morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prop1 PROP paired-like homeobox 1 acts_upstream_of_or_within ISO (PMID:16678101) MGI PMID:16678101 NCBI chrNW_004624733:41,852,638...41,856,493
Ensembl chrNW_004624733:41,850,474...41,856,459 		JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO (PMID:15037319) MGI PMID:15037319 NCBI chrNW_004624822:1,824,378...1,843,599
Ensembl chrNW_004624822:1,825,238...1,841,288 		JBrowse link
hypothalamus cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Otp orthopedia homeobox involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10557207) Ensembl
MGI		 PMID:10557207 GO_REF:0000107 NCBI chrNW_004624869:2,089,886...2,098,061
Ensembl chrNW_004624869:2,089,873...2,098,064 		JBrowse link
G Pou3f2 POU class 3 homeobox 2 acts_upstream_of_or_within ISO (PMID:8543156) MGI PMID:8543156 NCBI chrNW_004624810:6,283,443...6,287,594
Ensembl chrNW_004624810:6,286,066...6,287,397 		JBrowse link
G Prdm13 PR/SET domain 13 involved_in ISO (MGI:6836711|PMID:34730112) UniProt PMID:34730112 MGI:6836711 NCBI chrNW_004624810:5,421,231...5,428,863
Ensembl chrNW_004624810:5,421,522...5,428,848 		JBrowse link
G Prop1 PROP paired-like homeobox 1 acts_upstream_of_or_within ISO (PMID:9067988) MGI PMID:9067988 NCBI chrNW_004624733:41,852,638...41,856,493
Ensembl chrNW_004624733:41,850,474...41,856,459 		JBrowse link
hypothalamus cell migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxb1 forkhead box B1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624781:12,182,728...12,185,228
Ensembl chrNW_004624781:12,183,444...12,185,185 		JBrowse link
G Pitx2 paired like homeodomain 2 acts_upstream_of_or_within ISO (PMID:18206388) MGI PMID:18206388 NCBI chrNW_004624838:4,872,279...4,889,780
Ensembl chrNW_004624838:4,871,511...4,886,384 		JBrowse link
hypothalamus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bax BCL2 associated X, apoptosis regulator acts_upstream_of_or_within ISO (PMID:15342910) MGI PMID:15342910 NCBI chrNW_004624832:5,050,222...5,068,565
Ensembl chrNW_004624832:5,050,222...5,055,506 		JBrowse link
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 acts_upstream_of_or_within ISO (PMID:30498428) MGI PMID:30498428 NCBI chrNW_004624731:13,775,414...13,789,380
Ensembl chrNW_004624731:13,777,656...13,785,366 		JBrowse link
G Crh corticotropin releasing hormone ISO RGD PMID:20002962 RGD:5130950 NCBI chrNW_004624744:25,194,458...25,196,658
Ensembl chrNW_004624744:25,194,495...25,196,488 		JBrowse link
G Crhr1 corticotropin releasing hormone receptor 1 ISO RGD PMID:20002962 RGD:5130950 NCBI chrNW_004624849:2,484,144...2,528,130
Ensembl chrNW_004624849:2,484,109...2,528,223 		JBrowse link
G Crhr2 corticotropin releasing hormone receptor 2 ISO RGD PMID:20002962 RGD:5130950 NCBI chrNW_004624739:114,383...161,010
Ensembl chrNW_004624739:114,342...161,044 		JBrowse link
G Ctnnb1 catenin beta 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624730:77,876,361...77,887,228
Ensembl chrNW_004624730:77,875,257...77,887,234 		JBrowse link
G Esr2 estrogen receptor 2 ISO RGD PMID:12960049 RGD:1582276 NCBI chrNW_004624734:36,742,913...36,862,993
Ensembl chrNW_004624734:36,759,104...36,825,295 		JBrowse link
G Ets1 ETS proto-oncogene 1, transcription factor ISO RGD PMID:8946059 RGD:2313681 NCBI chrNW_004624812:2,795,961...2,920,263
Ensembl chrNW_004624812:2,795,686...2,920,274 		JBrowse link
G Gsx1 GS homeobox 1 acts_upstream_of_or_within ISO (PMID:8631293) MGI PMID:8631293 NCBI chrNW_004624776:10,704,726...10,707,108
Ensembl chrNW_004624776:10,705,843...10,707,093 		JBrowse link
G LOC101702005 aromatase ISO RGD PMID:15804399 RGD:4891928 NCBI chrNW_004624731:9,053,644...9,100,212
Ensembl chrNW_004624731:9,053,803...9,100,212 		JBrowse link
G LOC101712532 cytochrome b-c1 complex subunit 8 involved_in ISO (MGI:3662936|PMID:16901643) UniProt PMID:16901643 MGI:3662936 NCBI chrNW_004624733:39,233,359...39,235,008
Ensembl chrNW_004624733:39,233,359...39,234,945 		JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor ISO RGD PMID:23291449 RGD:7207858 NCBI chrNW_004624735:27,780,338...27,784,714
Ensembl chrNW_004624735:27,780,037...27,784,806 		JBrowse link
G Ncoa1 nuclear receptor coactivator 1 ISO RGD PMID:12551846 RGD:5688241 NCBI chrNW_004624738:6,770,745...7,054,616
Ensembl chrNW_004624738:6,943,726...7,054,454 		JBrowse link
G Nkx2-1 NK2 homeobox 1 involved_in ISO (PMID:32868762) MGI PMID:32868762 NCBI chrNW_004624838:300,902...304,944
Ensembl chrNW_004624838:300,458...305,517 		JBrowse link
G Nkx2-6 NK2 homeobox 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624758:18,908,988...18,914,794
Ensembl chrNW_004624758:18,911,010...18,914,001 		JBrowse link
G Rab3gap1 RAB3 GTPase activating protein catalytic subunit 1 involved_in ISO (PMID:20512159) BHF-UCL PMID:20512159 NCBI chrNW_004624732:34,450,616...34,593,675
Ensembl chrNW_004624732:34,450,630...34,593,675 		JBrowse link
G Rax retina and anterior neural fold homeobox acts_upstream_of_or_within ISO (PMID:925203) MGI PMID:925203 NCBI chrNW_004624792:4,652,430...4,657,048
Ensembl chrNW_004624792:4,652,493...4,656,826 		JBrowse link
G Reln reelin ISO RGD PMID:10436054 RGD:634730 NCBI chrNW_004624739:25,472,626...25,918,064
Ensembl chrNW_004624739:25,472,561...25,918,167 		JBrowse link
G Sox3 SRY-box transcription factor 3 involved_in ISO (MGI:3033563|PMID:14981518) UniProt PMID:14981518 MGI:3033563 NCBI chrNW_004624808:6,167,512...6,169,603
Ensembl chrNW_004624808:6,167,512...6,168,891 		JBrowse link
G Srd5a1 steroid 5 alpha-reductase 1 ISO RGD PMID:8770891 PMID:15804399 RGD:4891928 RGD:4892048 NCBI chrNW_004624751:4,309,518...4,335,332
Ensembl chrNW_004624751:4,309,447...4,336,083 		JBrowse link
G Srd5a2 steroid 5 alpha-reductase 2 ISO RGD PMID:15804399 RGD:4891928 NCBI chrNW_004624738:13,254,998...13,321,360
Ensembl chrNW_004624738:13,253,729...13,321,448 		JBrowse link
hypothalamus gonadotrophin-releasing hormone neuron development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nhlh2 nescient helix-loop-helix 2 acts_upstream_of_or_within_positive_effect ISO (MGI:5504302|PMID:23785158) UniProt PMID:23785158 MGI:5504302 NCBI chrNW_004624772:11,609,825...11,614,937
Ensembl chrNW_004624772:11,611,342...11,613,835 		JBrowse link
G Ubb ubiquitin B acts_upstream_of_or_within ISO (PMID:18299572) MGI PMID:18299572 NCBI chrNW_004624877:4,050,188...4,051,849
Ensembl chrNW_004624877:4,050,188...4,051,768 		JBrowse link
interkinetic nuclear migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cep120 centrosomal protein 120 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17920017) TreeGrafter
MGI
Ensembl		 PMID:17920017 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624774:18,587,363...18,654,726
Ensembl chrNW_004624774:18,587,485...18,654,897 		JBrowse link
G Dock7 dedicator of cytokinesis 7 involved_in ISO (MGI:5447899|PMID:22842144) UniProt PMID:22842144 MGI:5447899 NCBI chrNW_004624742:31,189,890...31,390,284
Ensembl chrNW_004624742:31,189,852...31,390,478 		JBrowse link
G Hhex hematopoietically expressed homeobox acts_upstream_of_or_within ISO (PMID:16364283) MGI PMID:16364283 NCBI chrNW_004624737:3,897,907...3,903,828
Ensembl chrNW_004624737:3,897,871...3,904,083 		JBrowse link
G Hook3 hook microtubule tethering protein 3 acts_upstream_of_or_within ISO (PMID:20152126) MGI PMID:20152126 NCBI chrNW_004624780:127,718...237,701
Ensembl chrNW_004624780:127,090...235,648 		JBrowse link
G Kif1a kinesin family member 1A ISO RGD PMID:21037580 RGD:13204706 NCBI chrNW_004624847:4,961,552...5,035,125
Ensembl chrNW_004624847:4,961,552...5,035,061 		JBrowse link
G Pax6 paired box 6 ISO RGD PMID:17825043 RGD:8552353 NCBI chrNW_004624766:20,536,581...20,554,589
Ensembl chrNW_004624766:20,536,233...20,554,759 		JBrowse link
G Pcm1 pericentriolar material 1 acts_upstream_of_or_within ISO (PMID:20152126) MGI PMID:20152126 NCBI chrNW_004624769:21,153,243...21,262,327 JBrowse link
G Tacc1 transforming acidic coiled-coil containing protein 1 acts_upstream_of_or_within ISO (PMID:17920017) MGI PMID:17920017 NCBI chrNW_004624780:4,769,270...4,886,475
Ensembl chrNW_004624780:4,771,789...4,847,317 		JBrowse link
G Tacc2 transforming acidic coiled-coil containing protein 2 acts_upstream_of_or_within ISO (PMID:17920017) MGI PMID:17920017 NCBI chrNW_004624737:24,472,104...24,685,969
Ensembl chrNW_004624737:24,471,943...24,649,007 		JBrowse link
G Tacc3 transforming acidic coiled-coil containing protein 3 acts_upstream_of_or_within ISO (PMID:17920017) MGI PMID:17920017 NCBI chrNW_004624755:25,683,314...25,695,102
Ensembl chrNW_004624755:25,683,137...25,692,504 		JBrowse link
interneuron migration from the subpallium to the cortex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arl13b ADP ribosylation factor like GTPase 13B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624789:6,710,858...6,783,097
Ensembl chrNW_004624789:6,710,681...6,783,667 		JBrowse link
lateral ganglionic eminence cell proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (PMID:20943929) MGI PMID:20943929 NCBI chrNW_004624740:18,961,395...19,238,760
Ensembl chrNW_004624740:18,975,596...19,235,900 		JBrowse link
lateral geniculate nucleus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chrnb2 cholinergic receptor nicotinic beta 2 subunit acts_upstream_of_or_within ISO (PMID:12097474) MGI PMID:12097474 NCBI chrNW_004624885:2,839,607...2,851,934
Ensembl chrNW_004624885:2,843,899...2,848,522 		JBrowse link
lateral ventricle development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aqp1 aquaporin 1 (Colton blood group) involved_in ISO (PMID:16133142)
(MGI:3608308|PMID:16133142)		 UniProt PMID:16133142 MGI:3608308 RGD:8553876 NCBI chrNW_004624783:164,615...177,317
Ensembl chrNW_004624783:164,609...177,766 		JBrowse link
G Atp1b2 ATPase Na+/K+ transporting subunit beta 2 acts_upstream_of_or_within ISO (MGI:69165|PMID:7525597) ARUK-UCL PMID:7525597 MGI:69165 NCBI chrNW_004624786:10,254,979...10,261,508
Ensembl chrNW_004624786:10,234,492...10,262,367 		JBrowse link
G Dbi diazepam binding inhibitor, acyl-CoA binding protein acts_upstream_of_or_within ISO (PMID:17150371) MGI PMID:17150371 NCBI chrNW_004624732:25,764,260...25,769,453
Ensembl chrNW_004624732:25,764,260...25,769,419 		JBrowse link
G Dnah5 dynein axonemal heavy chain 5 acts_upstream_of_or_within ISO (PMID:11912187) MGI PMID:11912187 NCBI chrNW_004624751:10,799,102...11,110,180
Ensembl chrNW_004624751:10,799,892...11,050,403 		JBrowse link
G Dpcd deleted in primary ciliary dyskinesia homolog (mouse) acts_upstream_of_or_within ISO (PMID:20080492) MGI PMID:20080492 NCBI chrNW_004624831:1,087,270...1,107,197
Ensembl chrNW_004624831:1,087,292...1,107,197 		JBrowse link
G Kdm2b lysine demethylase 2B involved_in ISO (MGI:4949568|PMID:21220025) BHF-UCL PMID:21220025 MGI:4949568 NCBI chrNW_004624747:21,922,249...22,047,246 JBrowse link
G Myh10 myosin heavy chain 10 acts_upstream_of_or_within ISO (PMID:10712438)
(PMID:11283949), (PMID:9356462)		 MGI PMID:9356462 PMID:10712438 PMID:11283949 NCBI chrNW_004624786:11,039,436...11,190,935
Ensembl chrNW_004624786:11,040,951...11,185,627 		JBrowse link
G Nfix nuclear factor I X acts_upstream_of_or_within
involved_in		 ISO (PMID:29452604)
(PMID:25960350)		 MGI PMID:25960350 PMID:29452604 NCBI chrNW_004624901:551,277...645,435
Ensembl chrNW_004624901:550,931...646,417 		JBrowse link
G Numb NUMB endocytic adaptor protein involved_in ISO (MGI:3763347|PMID:17174898) UniProt PMID:17174898 MGI:3763347 NCBI chrNW_004624734:27,994,662...28,144,719 JBrowse link
G Numbl NUMB like endocytic adaptor protein involved_in ISO (MGI:3763347|PMID:17174898) UniProt PMID:17174898 MGI:3763347 NCBI chrNW_004624925:595,679...623,479
Ensembl chrNW_004624925:596,448...622,641 		JBrowse link
G Pax5 paired box 5 acts_upstream_of_or_within ISO (PMID:23349049) MGI PMID:23349049 NCBI chrNW_004624930:491,220...660,476
Ensembl chrNW_004624930:491,892...667,530 		JBrowse link
G Rpgrip1l RPGRIP1 like acts_upstream_of_or_within ISO (PMID:17558409) MGI PMID:17558409 NCBI chrNW_004624757:3,080,162...3,172,750
Ensembl chrNW_004624757:3,079,712...3,172,115 		JBrowse link
G Tsku tsukushi, small leucine rich proteoglycan acts_upstream_of_or_within ISO (PMID:21055390) MGI PMID:21055390 NCBI chrNW_004624817:364,543...379,742
Ensembl chrNW_004624817:366,101...373,034 		JBrowse link
G Uchl5 ubiquitin C-terminal hydrolase L5 involved_in ISO (MGI:4849324|PMID:21048919) BHF-UCL PMID:21048919 MGI:4849324 NCBI chrNW_004624814:529,100...568,387
Ensembl chrNW_004624814:529,084...567,666 		JBrowse link
layer formation in cerebral cortex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adgrg1 adhesion G protein-coupled receptor G1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624746:28,439,855...28,476,551
Ensembl chrNW_004624746:28,436,895...28,476,926 		JBrowse link
G Cdk5 cyclin dependent kinase 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11517264) Ensembl
MGI		 PMID:11517264 GO_REF:0000107 NCBI chrNW_004624800:5,562,468...5,566,458
Ensembl chrNW_004624800:5,562,462...5,569,937 		JBrowse link
G Cdk5r1 cyclin dependent kinase 5 regulatory subunit 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11517264) Ensembl
MGI		 PMID:11517264 GO_REF:0000107 NCBI chrNW_004624875:538,752...542,874
Ensembl chrNW_004624875:538,790...543,044 		JBrowse link
G Cdk5r2 cyclin dependent kinase 5 regulatory subunit 2 acts_upstream_of_or_within ISO (PMID:11517264) MGI PMID:11517264 NCBI chrNW_004624823:6,053,469...6,054,748
Ensembl chrNW_004624823:6,053,550...6,054,659 		JBrowse link
G Col3a1 collagen type III alpha 1 chain involved_in ISO (PMID:22235340) MGI PMID:22235340 NCBI chrNW_004624899:1,192,078...1,230,528
Ensembl chrNW_004624899:1,192,360...1,230,404 		JBrowse link
G Ctnnb1 catenin beta 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20503375) Ensembl
MGI		 PMID:20503375 GO_REF:0000107 NCBI chrNW_004624730:77,876,361...77,887,228
Ensembl chrNW_004624730:77,875,257...77,887,234 		JBrowse link
G Dab2ip DAB2 interacting protein involved_in ISO (MGI:5463669|PMID:23056358) UniProt PMID:23056358 MGI:5463669 NCBI chrNW_004624760:13,472,500...13,658,070
Ensembl chrNW_004624760:13,472,672...13,657,930 		JBrowse link
G Dcx doublecortin acts_upstream_of_or_within ISO (PMID:19342486) MGI PMID:19342486 NCBI chrNW_004624803:4,168,556...4,304,642
Ensembl chrNW_004624803:4,168,556...4,299,979 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (PMID:21525285) MGI PMID:21525285 NCBI chrNW_004624740:18,961,395...19,238,760
Ensembl chrNW_004624740:18,975,596...19,235,900 		JBrowse link
G Lrp8 LDL receptor related protein 8 acts_upstream_of_or_within ISO (PMID:17330141) MGI PMID:17330141 NCBI chrNW_004624934:1,145,982...1,220,177
Ensembl chrNW_004624934:1,146,000...1,215,922 		JBrowse link
G Mboat7 membrane bound O-acyltransferase domain containing 7 acts_upstream_of_or_within ISO (PMID:23097495) MGI PMID:23097495 NCBI chrNW_004624832:2,407,110...2,417,566
Ensembl chrNW_004624832:2,407,196...2,417,574 		JBrowse link
G Nr2e1 nuclear receptor subfamily 2 group E member 1 acts_upstream_of_or_within ISO (PMID:15385616) MGI PMID:15385616 NCBI chrNW_004624780:14,098,144...14,119,791
Ensembl chrNW_004624780:14,098,360...14,119,772 		JBrowse link
G Pafah1b1 platelet activating factor acetylhydrolase 1b regulatory subunit 1 acts_upstream_of_or_within ISO (PMID:17330141) MGI PMID:17330141 NCBI chrNW_004624786:5,223,890...5,306,033
Ensembl chrNW_004624786:5,224,982...5,302,436 		JBrowse link
G Reln reelin acts_upstream_of_or_within ISO (PMID:20847152) MGI PMID:20847152 NCBI chrNW_004624739:25,472,626...25,918,064
Ensembl chrNW_004624739:25,472,561...25,918,167 		JBrowse link
G Socs7 suppressor of cytokine signaling 7 acts_upstream_of_or_within ISO (PMID:24210661) MGI PMID:24210661 NCBI chrNW_004624795:4,159,493...4,185,677
Ensembl chrNW_004624795:4,159,402...4,186,037 		JBrowse link
G Ulk4 unc-51 like kinase 4 acts_upstream_of_or_within ISO (PMID:34235142) MGI PMID:34235142 NCBI chrNW_004624730:77,495,705...77,876,547
Ensembl chrNW_004624730:77,495,747...77,875,622 		JBrowse link
limbic system development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cntnap2 contactin associated protein 2 involved_in ISO (PMID:18179895)
(MGI:4410430|PMID:18179895)		 BHF-UCL PMID:18179895 MGI:4410430 NCBI chrNW_004624800:7,182,588...9,280,407
Ensembl chrNW_004624800:7,181,020...9,279,678 		JBrowse link
G Tbx3 T-box transcription factor 3 acts_upstream_of_or_within ISO (PMID:17473172) MGI PMID:17473172 NCBI chrNW_004624747:18,128,003...18,142,366
Ensembl chrNW_004624747:18,128,028...18,142,451 		JBrowse link
mammillary axonal complex development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Zeb2 zinc finger E-box binding homeobox 2 acts_upstream_of_or_within ISO (PMID:25741725) MGI PMID:25741725 NCBI chrNW_004624732:44,097,348...44,226,701
Ensembl chrNW_004624732:44,101,613...44,139,997 		JBrowse link
mammillary body development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxb1 forkhead box B1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624781:12,182,728...12,185,228
Ensembl chrNW_004624781:12,183,444...12,185,185 		JBrowse link
mammillothalamic axonal tract development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxb1 forkhead box B1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624781:12,182,728...12,185,228
Ensembl chrNW_004624781:12,183,444...12,185,185 		JBrowse link
negative regulation of cell motility involved in cerebral cortex radial glia guided migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmerb1 bMERB domain containing 1 acts_upstream_of_or_within ISO (PMID:25099998) MGI PMID:25099998 NCBI chrNW_004624782:75,141...184,590
Ensembl chrNW_004624782:75,066...184,590 		JBrowse link
negative regulation of forebrain neuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B2m beta-2-microglobulin involved_in ISO (PMID:26147761)
(MGI:5708430|PMID:26147761)		 ARUK-UCL PMID:26147761 MGI:5708430 NCBI chrNW_004624804:11,514,728...11,521,625 JBrowse link
G Hes1 hes family bHLH transcription factor 1 involved_in ISO PMID:11399758 UniProt PMID:11399758 RGD:8554692 NCBI chrNW_004624730:63,563,848...63,566,303
Ensembl chrNW_004624730:63,563,754...63,566,781 		JBrowse link
G Hes5 hes family bHLH transcription factor 5 involved_in ISO PMID:11399758 UniProt PMID:11399758 RGD:8554692 NCBI chrNW_004624818:7,516,279...7,517,654
Ensembl chrNW_004624818:7,516,189...7,518,734 		JBrowse link
G Ptger3 prostaglandin E receptor 3 ISO RGD PMID:19555672 RGD:10043320 NCBI chrNW_004624742:25,177,340...25,356,911 JBrowse link
neuroblast division in subventricular zone term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akna AT-hook transcription factor involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624760:20,791,147...20,840,476
Ensembl chrNW_004624760:20,804,512...20,839,654 		JBrowse link
G Numb NUMB endocytic adaptor protein involved_in ISO (MGI:3763347|PMID:17174898) UniProt PMID:17174898 MGI:3763347 NCBI chrNW_004624734:27,994,662...28,144,719 JBrowse link
G Numbl NUMB like endocytic adaptor protein involved_in ISO (MGI:3763347|PMID:17174898) UniProt PMID:17174898 MGI:3763347 NCBI chrNW_004624925:595,679...623,479
Ensembl chrNW_004624925:596,448...622,641 		JBrowse link
neurohypophysis development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Otp orthopedia homeobox involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10557207) Ensembl
MGI		 PMID:10557207 GO_REF:0000107 NCBI chrNW_004624869:2,089,886...2,098,061
Ensembl chrNW_004624869:2,089,873...2,098,064 		JBrowse link
G Pou3f2 POU class 3 homeobox 2 acts_upstream_of_or_within ISO (PMID:8543156) MGI PMID:8543156 NCBI chrNW_004624810:6,283,443...6,287,594
Ensembl chrNW_004624810:6,286,066...6,287,397 		JBrowse link
neuronal-glial interaction involved in cerebral cortex radial glia guided migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lamb1 laminin subunit beta 1 involved_in ISO (PMID:23472759) UniProt PMID:23472759 NCBI chrNW_004624739:21,771,617...21,843,888
Ensembl chrNW_004624739:21,771,226...21,843,884 		JBrowse link
nucleokinesis involved in cell motility in cerebral cortex radial glia guided migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sun1 Sad1 and UNC84 domain containing 1 involved_in ISO (MGI:4412315|PMID:19874786) UniProt PMID:19874786 MGI:4412315 NCBI chrNW_004624740:26,361,340...26,463,869
Ensembl chrNW_004624740:26,410,853...26,462,513 		JBrowse link
G Sun2 Sad1 and UNC84 domain containing 2 involved_in ISO (MGI:4412315|PMID:19874786) UniProt PMID:19874786 MGI:4412315 NCBI chrNW_004624752:9,396,860...9,414,345
Ensembl chrNW_004624752:9,396,860...9,415,462 		JBrowse link
G Syne2 spectrin repeat containing nuclear envelope protein 2 involved_in ISO (MGI:4412315|PMID:19874786) UniProt PMID:19874786 MGI:4412315 NCBI chrNW_004624734:36,832,490...37,167,438 JBrowse link
nucleus accumbens development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a3 aldehyde dehydrogenase 1 family member A3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17207476) Ensembl
MGI		 PMID:17207476 GO_REF:0000107 NCBI chrNW_004624768:3,851,361...3,885,609
Ensembl chrNW_004624768:3,851,257...3,885,609 		JBrowse link
olfactory bulb development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agtpbp1 ATP/GTP binding carboxypeptidase 1 involved_in ISO (MGI:2159417|PMID:11884758) UniProt PMID:11884758 MGI:2159417 NCBI chrNW_004624809:9,119,412...9,321,226
Ensembl chrNW_004624809:9,119,951...9,339,604 		JBrowse link
G Ak1 adenylate kinase 1 ISO RGD PMID:9920788 RGD:632499 NCBI chrNW_004624760:7,684,098...7,693,051
Ensembl chrNW_004624760:7,684,109...7,693,405 		JBrowse link
G Ak3 adenylate kinase 3 ISO RGD PMID:9920788 RGD:632499 NCBI chrNW_004624736:9,428,736...9,494,645 JBrowse link
G Arx aristaless related homeobox acts_upstream_of_or_within ISO (PMID:15677725) MGI PMID:15677725 NCBI chrNW_004624897:1,279,138...1,303,210 JBrowse link
G Chd7 chromodomain helicase DNA binding protein 7 acts_upstream_of_or_within ISO (PMID:19279158) MGI PMID:19279158 NCBI chrNW_004624744:31,103,053...31,302,314
Ensembl chrNW_004624744:31,103,059...31,235,623 		JBrowse link
G Crtac1 cartilage acidic protein 1 acts_upstream_of_or_within ISO (PMID:21817055) MGI PMID:21817055 NCBI chrNW_004624737:9,498,107...9,653,496
Ensembl chrNW_004624737:9,497,385...9,653,295 		JBrowse link
G Csf1r colony stimulating factor 1 receptor involved_in ISO (MGI:5430247|PMID:22542597) ParkinsonsUK-UCL PMID:22542597 MGI:5430247 NCBI chrNW_004624774:9,363,156...9,391,939
Ensembl chrNW_004624774:9,363,908...9,391,986 		JBrowse link
G Dlx2 distal-less homeobox 2 acts_upstream_of_or_within ISO (PMID:7590232) MGI PMID:7590232 NCBI chrNW_004624787:9,528,942...9,532,252
Ensembl chrNW_004624787:9,530,034...9,533,109 		JBrowse link
G Dpysl2 dihydropyrimidinase like 2 ISO RGD PMID:14751288 RGD:2316247 NCBI chrNW_004624758:21,355,816...21,475,662
Ensembl chrNW_004624758:21,355,872...21,475,788 		JBrowse link
G Efna2 ephrin A2 ISO RGD PMID:12234653 RGD:634733 NCBI chrNW_004624828:7,380,675...7,393,322
Ensembl chrNW_004624828:7,380,554...7,393,376 		JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 ISO RGD PMID:18565716 RGD:13204724 NCBI chrNW_004624753:5,918,005...5,983,480
Ensembl chrNW_004624753:5,917,689...5,982,308 		JBrowse link
G Eomes eomesodermin acts_upstream_of_or_within ISO (PMID:19435790) MGI PMID:19435790 NCBI chrNW_004624788:5,550,569...5,557,342
Ensembl chrNW_004624788:5,550,445...5,557,321 		JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO (PMID:14605369) MGI PMID:14605369 NCBI chrNW_004624763:16,126,582...16,393,476
Ensembl chrNW_004624763:16,126,938...16,392,804 		JBrowse link
G Fezf1 FEZ family zinc finger 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16971467) Ensembl
MGI		 PMID:16971467 GO_REF:0000107 NCBI chrNW_004624783:13,715,987...13,719,287
Ensembl chrNW_004624783:13,713,422...13,718,604 		JBrowse link
G Fut1 fucosyltransferase 1 (H blood group) involved_in ISO (MGI:3701717|PMID:16884711) UniProt PMID:16884711 MGI:3701717 NCBI chrNW_004624832:5,168,170...5,171,176 JBrowse link
G Gsx2 GS homeobox 2 involved_in ISO (PMID:28814342) MGI PMID:28814342 NCBI chrNW_004624761:15,387,217...15,389,404
Ensembl chrNW_004624761:15,387,674...15,389,229 		JBrowse link
G Id2 inhibitor of DNA binding 2 acts_upstream_of_or_within ISO (PMID:19109490) MGI PMID:19109490 NCBI chrNW_004624846:2,281,292...2,283,596
Ensembl chrNW_004624846:2,277,961...2,283,571 		JBrowse link
G Kif14 kinesin family member 14 involved_in ISO (MGI:5485315|PMID:23308235), (MGI:5605219|PMID:24931760) UniProt PMID:23308235 PMID:24931760 MGI:5485315 MGI:5605219 NCBI chrNW_004624807:10,093,518...10,144,484
Ensembl chrNW_004624807:10,092,934...10,143,399 		JBrowse link
G Lhx2 LIM homeobox 2 acts_upstream_of_or_within ISO (PMID:19820705) MGI PMID:19820705 NCBI chrNW_004624760:10,951,837...10,982,592 JBrowse link
G Lrrk2 leucine rich repeat kinase 2 involved_in ISO (PMID:21168496) ParkinsonsUK-UCL PMID:21168496 NCBI chrNW_004624778:106,594...279,325
Ensembl chrNW_004624778:108,761...279,230 		JBrowse link
G Mecp2 methyl-CpG binding protein 2 ISO RGD PMID:12605461 RGD:12790706 NCBI chrNW_004624946:620,581...685,339
Ensembl chrNW_004624946:628,284...685,246 		JBrowse link
G Nfix nuclear factor I X involved_in ISO (PMID:25331604) MGI PMID:25331604 NCBI chrNW_004624901:551,277...645,435
Ensembl chrNW_004624901:550,931...646,417 		JBrowse link
G Nr2e1 nuclear receptor subfamily 2 group E member 1 acts_upstream_of_or_within ISO (PMID:12527005)
(PMID:11997145)		 MGI PMID:11997145 PMID:12527005 NCBI chrNW_004624780:14,098,144...14,119,791
Ensembl chrNW_004624780:14,098,360...14,119,772 		JBrowse link
G Pax6 paired box 6 ISO RGD PMID:14736749 RGD:8552333 NCBI chrNW_004624766:20,536,581...20,554,589
Ensembl chrNW_004624766:20,536,233...20,554,759 		JBrowse link
G Pcnt pericentrin acts_upstream_of_or_within ISO (PMID:20096683) MGI PMID:20096683 NCBI chrNW_004624745:31,402,791...31,516,522
Ensembl chrNW_004624745:31,403,014...31,515,751 		JBrowse link
G Rpgrip1l RPGRIP1 like acts_upstream_of_or_within ISO (PMID:17558409) MGI PMID:17558409 NCBI chrNW_004624757:3,080,162...3,172,750
Ensembl chrNW_004624757:3,079,712...3,172,115 		JBrowse link
G Sall1 spalt like transcription factor 1 acts_upstream_of_or_within ISO (PMID:18024993) MGI PMID:18024993 NCBI chrNW_004624757:5,572,510...5,587,623
Ensembl chrNW_004624757:5,572,528...5,587,617 		JBrowse link
G Sema3a semaphorin 3A involved_in ISO (PMID:22416012) UniProt PMID:22416012 NCBI chrNW_004624739:32,104,014...32,426,980
Ensembl chrNW_004624739:32,105,824...32,309,271 		JBrowse link
G Ski SKI proto-oncogene acts_upstream_of_or_within ISO (PMID:11731796) MGI PMID:11731796 NCBI chrNW_004624818:7,674,184...7,736,249
Ensembl chrNW_004624818:7,673,203...7,736,255 		JBrowse link
G Slit1 slit guidance ligand 1 acts_upstream_of_or_within ISO (PMID:12097499) MGI PMID:12097499 NCBI chrNW_004624737:8,458,444...8,632,316
Ensembl chrNW_004624737:8,460,508...8,632,302 		JBrowse link
G Slit2 slit guidance ligand 2 acts_upstream_of_or_within ISO (PMID:12097499) MGI PMID:12097499 NCBI chrNW_004624755:11,470,810...11,819,800
Ensembl chrNW_004624755:11,472,377...11,819,266 		JBrowse link
G Ttc8 tetratricopeptide repeat domain 8 acts_upstream_of_or_within ISO (PMID:21646512) MGI PMID:21646512 NCBI chrNW_004624734:13,437,234...13,497,269
Ensembl chrNW_004624734:13,437,221...13,497,510 		JBrowse link
G Zic1 Zic family member 1 involved_in ISO (PMID:17507568) MGI PMID:17507568 NCBI chrNW_004624730:24,440,717...24,444,663
Ensembl chrNW_004624730:24,440,192...24,448,421 		JBrowse link
G Zic3 Zic family member 3 involved_in ISO (PMID:28814342)
(PMID:17507568)		 MGI PMID:17507568 PMID:28814342 NCBI chrNW_004624808:9,201,025...9,212,192
Ensembl chrNW_004624808:9,200,952...9,212,093 		JBrowse link
olfactory bulb interneuron development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf5 activating transcription factor 5 acts_upstream_of_or_within ISO (PMID:23090999) MGI PMID:23090999 NCBI chrNW_004624832:4,400,586...4,405,203
Ensembl chrNW_004624832:4,396,604...4,405,185 		JBrowse link
G Robo1 roundabout guidance receptor 1 involved_in ISO (MGI:3702250|PMID:17360927) UniProt PMID:17360927 MGI:3702250 NCBI chrNW_004624874:4,234,640...5,359,333
Ensembl chrNW_004624874:4,949,538...5,357,690 		JBrowse link
G Robo2 roundabout guidance receptor 2 involved_in ISO (MGI:3702250|PMID:17360927) UniProt PMID:17360927 MGI:3702250 NCBI chrNW_004624745:800,963...2,121,445
Ensembl chrNW_004624745:804,797...1,390,551 		JBrowse link
G Sall3 spalt like transcription factor 3 acts_upstream_of_or_within ISO (PMID:18260139) MGI PMID:18260139 NCBI chrNW_004624806:1,432,771...1,454,794
Ensembl chrNW_004624806:1,435,617...1,454,779 		JBrowse link
G Wnt5a Wnt family member 5A involved_in ISO (MGI:5285122|PMID:21539518) UniProt PMID:21539518 MGI:5285122 NCBI chrNW_004624822:1,824,378...1,843,599
Ensembl chrNW_004624822:1,825,238...1,841,288 		JBrowse link
olfactory bulb interneuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf5 activating transcription factor 5 acts_upstream_of_or_within ISO (PMID:23090999) MGI PMID:23090999 NCBI chrNW_004624832:4,400,586...4,405,203
Ensembl chrNW_004624832:4,396,604...4,405,185 		JBrowse link
G Dicer1 dicer 1, ribonuclease III acts_upstream_of_or_within ISO (PMID:18184563) MGI PMID:18184563 NCBI chrNW_004624734:7,604,049...7,681,481
Ensembl chrNW_004624734:7,608,273...7,651,819 		JBrowse link
G Dlx5 distal-less homeobox 5 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:25937343) MGI
Ensembl		 PMID:25937343 GO_REF:0000107 NCBI chrNW_004624813:3,760,890...3,765,309
Ensembl chrNW_004624813:3,760,661...3,765,517 		JBrowse link
G Erbb4 erb-b2 receptor tyrosine kinase 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624765:3,612,781...4,742,219
Ensembl chrNW_004624765:3,613,379...4,734,585 		JBrowse link
G Gsx2 GS homeobox 2 acts_upstream_of_or_within ISO (PMID:11060228) MGI PMID:11060228 NCBI chrNW_004624761:15,387,217...15,389,404
Ensembl chrNW_004624761:15,387,674...15,389,229 		JBrowse link
G Sall1 spalt like transcription factor 1 involved_in ISO (MGI:4420747|PMID:18024993) UniProt PMID:18024993 MGI:4420747 NCBI chrNW_004624757:5,572,510...5,587,623
Ensembl chrNW_004624757:5,572,528...5,587,617 		JBrowse link
G Uncx UNC homeobox acts_upstream_of_or_within ISO (PMID:20692344) MGI PMID:20692344 NCBI chrNW_004624740:26,793,627...26,797,753
Ensembl chrNW_004624740:26,793,627...26,797,752 		JBrowse link
olfactory bulb mitral cell layer development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ogdh oxoglutarate dehydrogenase involved_in ISO (MGI:3662936|PMID:16901643) UniProt PMID:16901643 MGI:3662936 NCBI chrNW_004624740:7,481,719...7,549,809
Ensembl chrNW_004624740:7,482,314...7,549,417 		JBrowse link
G Pax6 paired box 6 ISO RGD PMID:14736749 RGD:8552333 NCBI chrNW_004624766:20,536,581...20,554,589
Ensembl chrNW_004624766:20,536,233...20,554,759 		JBrowse link
G Sall1 spalt like transcription factor 1 involved_in ISO (PMID:18024993) UniProt PMID:18024993 NCBI chrNW_004624757:5,572,510...5,587,623
Ensembl chrNW_004624757:5,572,528...5,587,617 		JBrowse link
olfactory lobe development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf5 activating transcription factor 5 acts_upstream_of_or_within ISO (PMID:23090999) MGI PMID:23090999 NCBI chrNW_004624832:4,400,586...4,405,203
Ensembl chrNW_004624832:4,396,604...4,405,185 		JBrowse link
G Htt huntingtin acts_upstream_of_or_within ISO (PMID:12926013) MGI PMID:12926013 NCBI chrNW_004624755:24,602,955...24,729,584
Ensembl chrNW_004624755:24,603,490...24,729,333 		JBrowse link
G Sema7a semaphorin 7A (JohnMiltonHagen blood group) acts_upstream_of_or_within ISO (PMID:12879062) MGI PMID:12879062 NCBI chrNW_004624781:221,821...244,854
Ensembl chrNW_004624781:221,812...248,185 		JBrowse link
orbitofrontal cortex development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arpc5 actin related protein 2/3 complex subunit 5 ISO RGD PMID:23459330 RGD:11049475 NCBI chrNW_004624814:10,063,157...10,073,143
Ensembl chrNW_004624814:10,063,092...10,073,313 		JBrowse link
G Drd1 dopamine receptor D1 ISO RGD PMID:22015925 RGD:7248608 NCBI chrNW_004624733:14,517,540...14,522,173
Ensembl chrNW_004624733:14,518,146...14,520,905 		JBrowse link
G Drd2 dopamine receptor D2 ISO RGD PMID:22015925 RGD:7248608 NCBI chrNW_004624784:8,828,589...8,906,617
Ensembl chrNW_004624784:8,827,006...8,865,529 		JBrowse link
G Fgfr1 fibroblast growth factor receptor 1 involved_in ISO (MGI:4452541|PMID:20410112) UniProt PMID:20410112 MGI:4452541 NCBI chrNW_004624780:5,161,245...5,212,641
Ensembl chrNW_004624780:5,161,073...5,213,870 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 involved_in ISO (MGI:4452541|PMID:20410112) UniProt PMID:20410112 MGI:4452541 NCBI chrNW_004624737:25,052,698...25,158,346
Ensembl chrNW_004624737:25,052,606...25,158,529 		JBrowse link
G Reln reelin ISO RGD PMID:20035841 RGD:2317761 NCBI chrNW_004624739:25,472,626...25,918,064
Ensembl chrNW_004624739:25,472,561...25,918,167 		JBrowse link
pallium cell proliferation in forebrain term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Igf2bp1 insulin like growth factor 2 mRNA binding protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24192035) Ensembl
MGI		 PMID:24192035 GO_REF:0000107 NCBI chrNW_004624795:5,352,932...5,391,617
Ensembl chrNW_004624795:5,353,005...5,385,521 		JBrowse link
pallium development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO (PMID:16613831) MGI PMID:16613831 NCBI chrNW_004624831:1,251,991...1,259,247
Ensembl chrNW_004624831:1,253,044...1,257,741 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (PMID:10409502) MGI PMID:10409502 NCBI chrNW_004624740:18,961,395...19,238,760
Ensembl chrNW_004624740:18,975,596...19,235,900 		JBrowse link
G Pax6 paired box 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11124115) Ensembl
MGI		 PMID:11124115 GO_REF:0000107 NCBI chrNW_004624766:20,536,581...20,554,589
Ensembl chrNW_004624766:20,536,233...20,554,759 		JBrowse link
pituitary gland development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adcyap1 adenylate cyclase activating polypeptide 1 ISO RGD PMID:18160680 RGD:2325274 NCBI chrNW_004624770:11,359,606...11,375,833
Ensembl chrNW_004624770:11,358,286...11,375,813 		JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family member A2 ISO RGD PMID:17180597 RGD:2306413 NCBI chrNW_004624781:13,756,469...13,845,253
Ensembl chrNW_004624781:13,756,390...13,845,479 		JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family member A3 ISO RGD PMID:17180597 RGD:2306413 NCBI chrNW_004624768:3,851,361...3,885,609
Ensembl chrNW_004624768:3,851,257...3,885,609 		JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO (PMID:9806931) MGI PMID:9806931 NCBI chrNW_004624731:15,262,480...15,269,196
Ensembl chrNW_004624731:15,263,274...15,269,743 		JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO (PMID:17359964) MGI PMID:17359964 NCBI chrNW_004624841:218,642...304,744
Ensembl chrNW_004624841:219,133...265,397 		JBrowse link
G Cdh1 cadherin 1 ISO RGD PMID:17373711 RGD:2289637 NCBI chrNW_004624746:17,480,472...17,557,722
Ensembl chrNW_004624746:17,483,469...17,557,581 		JBrowse link
G Creb1 cAMP responsive element binding protein 1 acts_upstream_of_or_within ISO (PMID:16141355) MGI PMID:16141355 NCBI chrNW_004624765:8,374,160...8,436,969 JBrowse link
G Ets1 ETS proto-oncogene 1, transcription factor ISO RGD PMID:8946059 RGD:2313681 NCBI chrNW_004624812:2,795,961...2,920,263
Ensembl chrNW_004624812:2,795,686...2,920,274 		JBrowse link
G Fgf10 fibroblast growth factor 10 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11062007) Ensembl
MGI		 PMID:11062007 GO_REF:0000107 NCBI chrNW_004624759:10,904,626...10,983,509
Ensembl chrNW_004624759:10,904,989...10,983,574 		JBrowse link
G Gata2 GATA binding protein 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:16543408) MGI
Ensembl		 PMID:16543408 GO_REF:0000107 NCBI chrNW_004624961:147,685...155,614
Ensembl chrNW_004624961:143,358...154,003 		JBrowse link
G Gli1 GLI family zinc finger 1 acts_upstream_of_or_within ISO (PMID:10725236) MGI PMID:10725236 NCBI chrNW_004624802:10,483,279...10,494,539
Ensembl chrNW_004624802:10,483,219...10,498,609 		JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO (PMID:10725236) MGI PMID:10725236 NCBI chrNW_004624732:24,159,407...24,381,495
Ensembl chrNW_004624732:24,159,312...24,328,452 		JBrowse link
G Hes1 hes family bHLH transcription factor 1 acts_upstream_of_or_within ISO (PMID:17426285)
(PMID:17015435), (PMID:17426285)		 MGI PMID:17015435 PMID:17426285 NCBI chrNW_004624730:63,563,848...63,566,303
Ensembl chrNW_004624730:63,563,754...63,566,781 		JBrowse link
G Hesx1 HESX homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19093031)
(PMID:11731482), (PMID:9620767)
(PMID:20181723)
(PMID:18775421)		 TreeGrafter
MGI		 PMID:9620767 PMID:11731482 PMID:18775421 PMID:19093031 PMID:20181723 GO_REF:0000118 NCBI chrNW_004624822:74,344...102,484
Ensembl chrNW_004624822:74,373...101,828 		JBrowse link
G Hmga2 high mobility group AT-hook 2 acts_upstream_of_or_within ISO (PMID:504232) MGI PMID:504232 NCBI chrNW_004624802:2,337,344...2,468,757
Ensembl chrNW_004624802:2,337,464...2,467,990 		JBrowse link
G Inhbb inhibin subunit beta B ISO RGD PMID:18160680 RGD:2325274 NCBI chrNW_004624732:24,754,601...24,755,890
Ensembl chrNW_004624732:24,754,618...24,755,995 		JBrowse link
G Isl1 ISL LIM homeobox 1 acts_upstream_of_or_within ISO (PMID:9806931) MGI PMID:9806931 NCBI chrNW_004624759:7,996,177...8,006,281
Ensembl chrNW_004624759:7,994,242...8,006,311 		JBrowse link
G Kdm1a lysine demethylase 1A acts_upstream_of_or_within ISO (PMID:17392792) MGI PMID:17392792 NCBI chrNW_004624764:7,664,550...7,742,494 JBrowse link
G Lhx3 LIM homeobox 3 acts_upstream_of_or_within ISO (PMID:18037398) MGI PMID:18037398 NCBI chrNW_004624760:1,428,496...1,435,414
Ensembl chrNW_004624760:1,429,384...1,435,414 		JBrowse link
G Msx1 msh homeobox 1 ISO RGD PMID:16451220 RGD:5132608 NCBI chrNW_004624755:21,857,360...21,861,235
Ensembl chrNW_004624755:21,857,461...21,861,337 		JBrowse link
G Nkx2-1 NK2 homeobox 1 acts_upstream_of_or_within ISO (PMID:9806931) MGI PMID:9806931 NCBI chrNW_004624838:300,902...304,944
Ensembl chrNW_004624838:300,458...305,517 		JBrowse link
G Nog noggin acts_upstream_of_or_within ISO (PMID:17359964) MGI PMID:17359964 NCBI chrNW_004624795:11,696,102...11,697,367
Ensembl chrNW_004624795:11,696,353...11,697,051 		JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:10588713) MGI
Ensembl		 PMID:10588713 GO_REF:0000107 NCBI chrNW_004624766:20,536,581...20,554,589
Ensembl chrNW_004624766:20,536,233...20,554,759 		JBrowse link
G Pcsk1 proprotein convertase subtilisin/kexin type 1 ISO RGD PMID:15208361 RGD:2308902 NCBI chrNW_004624743:14,993,436...15,036,512
Ensembl chrNW_004624743:14,994,172...15,036,412 		JBrowse link
G Pitx1 paired like homeodomain 1 acts_upstream_of_or_within ISO (PMID:10049363) MGI PMID:10049363 NCBI chrNW_004624733:12,028,497...12,034,612
Ensembl chrNW_004624733:12,029,298...12,034,413 		JBrowse link
G Pitx2 paired like homeodomain 2 acts_upstream_of_or_within ISO (PMID:10498698)
(PMID:10499586)		 MGI PMID:10498698 PMID:10499586 NCBI chrNW_004624838:4,872,279...4,889,780
Ensembl chrNW_004624838:4,871,511...4,886,384 		JBrowse link
G Pou1f1 POU class 1 homeobox 1 acts_upstream_of_or_within ISO (PMID:16556738) MGI PMID:16556738 NCBI chrNW_004624789:3,589,863...3,605,655
Ensembl chrNW_004624789:3,592,214...3,605,537 		JBrowse link
G Prop1 PROP paired-like homeobox 1 acts_upstream_of_or_within ISO (PMID:11731482) MGI PMID:11731482 NCBI chrNW_004624733:41,852,638...41,856,493
Ensembl chrNW_004624733:41,850,474...41,856,459 		JBrowse link
G Rbpj recombination signal binding protein for immunoglobulin kappa J region acts_upstream_of_or_within ISO (PMID:17015435) MGI PMID:17015435 NCBI chrNW_004624755:6,176,497...6,298,034
Ensembl chrNW_004624755:6,176,497...6,298,225 		JBrowse link
G Sall1 spalt like transcription factor 1 involved_in ISO (PMID:12065233) UniProt PMID:12065233 NCBI chrNW_004624757:5,572,510...5,587,623
Ensembl chrNW_004624757:5,572,528...5,587,617 		JBrowse link
G Six3 SIX homeobox 3 involved_in
acts_upstream_of_or_within		 ISO (MGI:3821506|PMID:18775421)
(PMID:18775421)		 UniProt
MGI		 PMID:18775421 MGI:3821506 NCBI chrNW_004624738:26,379,172...26,391,669
Ensembl chrNW_004624738:26,380,088...26,394,252 		JBrowse link
G Sox2 SRY-box transcription factor 2 involved_in ISO (PMID:18285410) UniProt PMID:18285410 NCBI chrNW_004624730:59,570,879...59,573,001
Ensembl chrNW_004624730:59,570,915...59,571,871 		JBrowse link
G Sox3 SRY-box transcription factor 3 involved_in ISO (MGI:3033563|PMID:14981518) UniProt PMID:14981518 MGI:3033563 NCBI chrNW_004624808:6,167,512...6,169,603
Ensembl chrNW_004624808:6,167,512...6,168,891 		JBrowse link
G Srd5a1 steroid 5 alpha-reductase 1 ISO RGD PMID:8770891 RGD:4892048 NCBI chrNW_004624751:4,309,518...4,335,332
Ensembl chrNW_004624751:4,309,447...4,336,083 		JBrowse link
G Tbx19 T-box transcription factor 19 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:11447259) MGI
Ensembl		 PMID:11447259 GO_REF:0000107 NCBI chrNW_004624826:6,243,809...6,268,973
Ensembl chrNW_004624826:6,243,809...6,267,989 		JBrowse link
G Tcf7l2 transcription factor 7 like 2 acts_upstream_of_or_within ISO (PMID:17919533) MGI PMID:17919533 NCBI chrNW_004624737:33,341,574...33,526,814
Ensembl chrNW_004624737:33,341,029...33,526,928 		JBrowse link
positive regulation of forebrain neuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prox1 prospero homeobox 1 involved_in ISO (MGI:4849596|PMID:20808958) BHF-UCL PMID:20808958 MGI:4849596 NCBI chrNW_004624771:19,188,543...19,238,621
Ensembl chrNW_004624771:19,196,366...19,233,338 		JBrowse link
postnatal olfactory bulb interneuron migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgfr1 fibroblast growth factor receptor 1 ISO RGD PMID:20083104 RGD:2325172 NCBI chrNW_004624780:5,161,245...5,212,641
Ensembl chrNW_004624780:5,161,073...5,213,870 		JBrowse link
prolactin secreting cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lhx3 LIM homeobox 3 acts_upstream_of_or_within ISO (PMID:8638120) MGI PMID:8638120 NCBI chrNW_004624760:1,428,496...1,435,414
Ensembl chrNW_004624760:1,429,384...1,435,414 		JBrowse link
putamen development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxp2 forkhead box P2 involved_in ISO (PMID:11872605) UniProt PMID:11872605 NCBI chrNW_004624827:4,813,203...5,086,326
Ensembl chrNW_004624827:4,817,092...5,086,488 		JBrowse link
pyramidal neuron development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg7 autophagy related 7 acts_upstream_of_or_within ISO (PMID:16625205) MGI PMID:16625205 NCBI chrNW_004624943:231,978...480,933
Ensembl chrNW_004624943:232,618...481,290 		JBrowse link
G Atp7a ATPase copper transporting alpha acts_upstream_of_or_within ISO (PMID:2473662) MGI PMID:2473662 NCBI chrNW_004624836:2,804,349...3,058,125
Ensembl chrNW_004624836:2,808,681...2,993,452 		JBrowse link
G Dclk2 doublecortin like kinase 2 acts_upstream_of_or_within ISO (PMID:19342486) MGI PMID:19342486 NCBI chrNW_004624858:1,638,145...1,809,605
Ensembl chrNW_004624858:1,637,986...1,788,172 		JBrowse link
G Dcx doublecortin acts_upstream_of_or_within ISO (PMID:19342486) MGI PMID:19342486 NCBI chrNW_004624803:4,168,556...4,304,642
Ensembl chrNW_004624803:4,168,556...4,299,979 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 involved_in ISO (MGI:4452541|PMID:20410112) UniProt PMID:20410112 MGI:4452541 NCBI chrNW_004624737:25,052,698...25,158,346
Ensembl chrNW_004624737:25,052,606...25,158,529 		JBrowse link
G LOC101712532 cytochrome b-c1 complex subunit 8 involved_in ISO (MGI:3662936|PMID:16901643) UniProt PMID:16901643 MGI:3662936 NCBI chrNW_004624733:39,233,359...39,235,008
Ensembl chrNW_004624733:39,233,359...39,234,945 		JBrowse link
G Ogdh oxoglutarate dehydrogenase involved_in ISO (MGI:3662936|PMID:16901643) UniProt PMID:16901643 MGI:3662936 NCBI chrNW_004624740:7,481,719...7,549,809
Ensembl chrNW_004624740:7,482,314...7,549,417 		JBrowse link
G Plxna3 plexin A3 acts_upstream_of_or_within ISO (PMID:11683995) MGI PMID:11683995 NCBI chrNW_004624946:924,956...939,483
Ensembl chrNW_004624946:926,521...939,483 		JBrowse link
G Scyl2 SCY1 like pseudokinase 2 involved_in ISO (MGI:5694521|PMID:26203146) UniProt PMID:26203146 MGI:5694521 NCBI chrNW_004624750:7,412,869...7,477,965 JBrowse link
G Slc4a10 solute carrier family 4 member 10 acts_upstream_of_or_within ISO (PMID:18165320) MGI PMID:18165320 NCBI chrNW_004624732:3,541,525...3,849,805
Ensembl chrNW_004624732:3,540,954...3,849,863 		JBrowse link
pyramidal neuron migration to cerebral cortex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Disc1 DISC1 scaffold protein ISO RGD PMID:16299498 RGD:5509783 NCBI chrNW_004624775:17,820,590...18,165,640
Ensembl chrNW_004624775:17,831,272...18,165,668 		JBrowse link
G Foxg1 forkhead box G1 acts_upstream_of_or_within ISO (PMID:22726835) MGI PMID:22726835 NCBI chrNW_004624820:3,542,767...3,547,180
Ensembl chrNW_004624820:3,543,687...3,545,147 		JBrowse link
G Zmiz1 zinc finger MIZ-type containing 1 involved_in ISO (PMID:30639322) UniProt PMID:30639322 NCBI chrNW_004624754:12,106,828...12,299,188
Ensembl chrNW_004624754:12,145,570...12,299,318 		JBrowse link
regulation of forebrain neuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata2 GATA binding protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22991444) Ensembl
MGI		 PMID:22991444 GO_REF:0000107 NCBI chrNW_004624961:147,685...155,614
Ensembl chrNW_004624961:143,358...154,003 		JBrowse link
regulation of timing of subpallium neuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl1 achaete-scute family bHLH transcription factor 1 acts_upstream_of_or_within ISO (PMID:9876181) MGI PMID:9876181 NCBI chrNW_004624750:5,487,046...5,489,399
Ensembl chrNW_004624750:5,487,053...5,493,339 		JBrowse link
somatotropin secreting cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ghrhr growth hormone releasing hormone receptor acts_upstream_of_or_within ISO (PMID:6116352), (PMID:6194978) MGI PMID:6116352 PMID:6194978 NCBI chrNW_004624783:200,935...214,453
Ensembl chrNW_004624783:200,940...214,373 		JBrowse link
G Pou1f1 POU class 1 homeobox 1 acts_upstream_of_or_within ISO (PMID:17015435) MGI PMID:17015435 NCBI chrNW_004624789:3,589,863...3,605,655
Ensembl chrNW_004624789:3,592,214...3,605,537 		JBrowse link
somatotropin secreting cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lhx3 LIM homeobox 3 acts_upstream_of_or_within ISO (PMID:8638120) MGI PMID:8638120 NCBI chrNW_004624760:1,428,496...1,435,414
Ensembl chrNW_004624760:1,429,384...1,435,414 		JBrowse link
G Pou1f1 POU class 1 homeobox 1 acts_upstream_of_or_within ISO (PMID:1334535), (PMID:6194978) MGI PMID:1334535 PMID:6194978 NCBI chrNW_004624789:3,589,863...3,605,655
Ensembl chrNW_004624789:3,592,214...3,605,537 		JBrowse link
G Prop1 PROP paired-like homeobox 1 acts_upstream_of_or_within ISO (PMID:6194978) MGI PMID:6194978 NCBI chrNW_004624733:41,852,638...41,856,493
Ensembl chrNW_004624733:41,850,474...41,856,459 		JBrowse link
G Wnt4 Wnt family member 4 acts_upstream_of_or_within ISO (PMID:18351662) MGI PMID:18351662 NCBI chrNW_004624764:6,913,027...6,934,650
Ensembl chrNW_004624764:6,921,811...6,933,392 		JBrowse link
striatal medium spiny neuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl11b BCL11 transcription factor B acts_upstream_of_or_within ISO (PMID:18199763) MGI PMID:18199763 NCBI chrNW_004624734:4,560,362...4,649,219
Ensembl chrNW_004624734:4,560,699...4,647,858 		JBrowse link
G Inhba inhibin subunit beta A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624740:19,458,835...19,482,570
Ensembl chrNW_004624740:19,464,289...19,482,888 		JBrowse link
G Shank3 SH3 and multiple ankyrin repeat domains 3 involved_in ISO (MGI:4948759|PMID:21423165) BHF-UCL PMID:21423165 MGI:4948759 NCBI chrNW_004624752:72,545...127,321
Ensembl chrNW_004624752:72,615...127,325 		JBrowse link
G Zswim6 zinc finger SWIM-type containing 6 involved_in ISO (MGI:6140923|PMID:28433741) UniProt PMID:28433741 MGI:6140923 NCBI chrNW_004624815:8,481,026...8,673,090
Ensembl chrNW_004624815:8,482,855...8,673,090 		JBrowse link
striatum development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bbs1 Bardet-Biedl syndrome 1 acts_upstream_of_or_within ISO (PMID:18032602) MGI PMID:18032602 NCBI chrNW_004624767:19,875,597...19,893,652
Ensembl chrNW_004624767:19,875,535...19,893,694 		JBrowse link
G Bbs2 Bardet-Biedl syndrome 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:18032602) MGI
Ensembl		 PMID:18032602 GO_REF:0000107 NCBI chrNW_004624757:55,861...88,703
Ensembl chrNW_004624757:55,811...88,562 		JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 acts_upstream_of_or_within ISO (PMID:18032602) MGI PMID:18032602 NCBI chrNW_004624781:1,502,069...1,553,101
Ensembl chrNW_004624781:1,503,816...1,538,755 		JBrowse link
G Cntnap2 contactin associated protein 2 involved_in ISO (PMID:18179893) BHF-UCL PMID:18179893 NCBI chrNW_004624800:7,182,588...9,280,407
Ensembl chrNW_004624800:7,181,020...9,279,678 		JBrowse link
G Drd1 dopamine receptor D1 acts_upstream_of_or_within ISO (PMID:17360497) RGD
MGI		 PMID:17360497 PMID:22015925 RGD:7248608 NCBI chrNW_004624733:14,517,540...14,522,173
Ensembl chrNW_004624733:14,518,146...14,520,905 		JBrowse link
G Drd2 dopamine receptor D2 ISO RGD PMID:22015925 RGD:7248608 NCBI chrNW_004624784:8,828,589...8,906,617
Ensembl chrNW_004624784:8,827,006...8,865,529 		JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 ISO RGD PMID:18565716 RGD:13204724 NCBI chrNW_004624753:5,918,005...5,983,480
Ensembl chrNW_004624753:5,917,689...5,982,308 		JBrowse link
G Foxp1 forkhead box P1 ISO RGD PMID:12815709 RGD:11536004 NCBI chrNW_004624773:5,543,529...6,076,522
Ensembl chrNW_004624773:5,543,536...5,883,131 		JBrowse link
G Hprt1 hypoxanthine phosphoribosyltransferase 1 acts_upstream_of_or_within ISO (PMID:9886073) MGI PMID:9886073 NCBI chrNW_004624797:14,148,580...14,184,471 JBrowse link
G Htt huntingtin acts_upstream_of_or_within ISO (PMID:11030759)
(PMID:17715336)		 MGI PMID:11030759 PMID:17715336 NCBI chrNW_004624755:24,602,955...24,729,584
Ensembl chrNW_004624755:24,603,490...24,729,333 		JBrowse link
G Lrrk2 leucine rich repeat kinase 2 ISO RGD PMID:18272292 RGD:13462055 NCBI chrNW_004624778:106,594...279,325
Ensembl chrNW_004624778:108,761...279,230 		JBrowse link
G Mecp2 methyl-CpG binding protein 2 ISO RGD PMID:12605461 RGD:12790706 NCBI chrNW_004624946:620,581...685,339
Ensembl chrNW_004624946:628,284...685,246 		JBrowse link
G Mkks MKKS centrosomal shuttling protein acts_upstream_of_or_within ISO (PMID:18032602) MGI PMID:18032602 NCBI chrNW_004624741:11,323,935...11,447,669
Ensembl chrNW_004624741:11,425,368...11,435,706 		JBrowse link
G Ogdh oxoglutarate dehydrogenase involved_in ISO (MGI:3662936|PMID:16901643) UniProt PMID:16901643 MGI:3662936 NCBI chrNW_004624740:7,481,719...7,549,809
Ensembl chrNW_004624740:7,482,314...7,549,417 		JBrowse link
G Rarb retinoic acid receptor beta acts_upstream_of_or_within ISO (PMID:18443282) MGI PMID:18443282 NCBI chrNW_004624788:2,738,341...3,493,140
Ensembl chrNW_004624788:3,257,697...3,493,132 		JBrowse link
G Secisbp2 SECIS binding protein 2 acts_upstream_of_or_within ISO (PMID:24844465) MGI PMID:24844465 NCBI chrNW_004624765:23,246,342...23,296,071
Ensembl chrNW_004624765:23,247,135...23,296,465 		JBrowse link
G Slc7a11 solute carrier family 7 member 11 acts_upstream_of_or_within ISO (PMID:17035536) MGI PMID:17035536 NCBI chrNW_004624777:18,540,006...18,619,881
Ensembl chrNW_004624777:18,546,799...18,619,947 		JBrowse link
G Slitrk5 SLIT and NTRK like family member 5 acts_upstream_of_or_within ISO (PMID:20418887) MGI PMID:20418887 NCBI chrNW_004624779:5,382,712...5,390,490
Ensembl chrNW_004624779:5,382,466...5,390,079 		JBrowse link
subpallium development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dlx1 distal-less homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23042297) Ensembl
MGI		 PMID:23042297 GO_REF:0000107 NCBI chrNW_004624787:9,514,170...9,519,309
Ensembl chrNW_004624787:9,514,573...9,519,724 		JBrowse link
G Dlx2 distal-less homeobox 2 acts_upstream_of_or_within ISO (PMID:23042297) MGI PMID:23042297 NCBI chrNW_004624787:9,528,942...9,532,252
Ensembl chrNW_004624787:9,530,034...9,533,109 		JBrowse link
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO (PMID:16613831) MGI PMID:16613831 NCBI chrNW_004624831:1,251,991...1,259,247
Ensembl chrNW_004624831:1,253,044...1,257,741 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (PMID:20943929) MGI PMID:20943929 NCBI chrNW_004624740:18,961,395...19,238,760
Ensembl chrNW_004624740:18,975,596...19,235,900 		JBrowse link
G Gsx2 GS homeobox 2 acts_upstream_of_or_within ISO (PMID:23042297) MGI PMID:23042297 NCBI chrNW_004624761:15,387,217...15,389,404
Ensembl chrNW_004624761:15,387,674...15,389,229 		JBrowse link
subpallium neuron fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl1 achaete-scute family bHLH transcription factor 1 acts_upstream_of_or_within ISO (PMID:9876181) MGI PMID:9876181 NCBI chrNW_004624750:5,487,046...5,489,399
Ensembl chrNW_004624750:5,487,053...5,493,339 		JBrowse link
G Gsx2 GS homeobox 2 acts_upstream_of_or_within ISO (PMID:11124115) MGI PMID:11124115 NCBI chrNW_004624761:15,387,217...15,389,404
Ensembl chrNW_004624761:15,387,674...15,389,229 		JBrowse link
subthalamic nucleus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pitx2 paired like homeodomain 2 acts_upstream_of_or_within ISO (PMID:18206388) MGI PMID:18206388 NCBI chrNW_004624838:4,872,279...4,889,780
Ensembl chrNW_004624838:4,871,511...4,886,384 		JBrowse link
subthalamus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101712532 cytochrome b-c1 complex subunit 8 involved_in ISO (MGI:3662936|PMID:16901643) UniProt PMID:16901643 MGI:3662936 NCBI chrNW_004624733:39,233,359...39,235,008
Ensembl chrNW_004624733:39,233,359...39,234,945 		JBrowse link
superior temporal gyrus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cntnap2 contactin associated protein 2 involved_in ISO (PMID:18179893) BHF-UCL PMID:18179893 NCBI chrNW_004624800:7,182,588...9,280,407
Ensembl chrNW_004624800:7,181,020...9,279,678 		JBrowse link
G Gsk3b glycogen synthase kinase 3 beta involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624731:28,178,647...28,368,784
Ensembl chrNW_004624731:28,178,628...28,366,420 		JBrowse link
tangential migration from the subventricular zone to the olfactory bulb term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgfr1 fibroblast growth factor receptor 1 ISO RGD PMID:20083104 RGD:2325172 NCBI chrNW_004624780:5,161,245...5,212,641
Ensembl chrNW_004624780:5,161,073...5,213,870 		JBrowse link
G Lrrk2 leucine rich repeat kinase 2 involved_in ISO (PMID:21168496) ParkinsonsUK-UCL PMID:21168496 NCBI chrNW_004624778:106,594...279,325
Ensembl chrNW_004624778:108,761...279,230 		JBrowse link
G Ogdh oxoglutarate dehydrogenase involved_in ISO (MGI:3662936|PMID:16901643) UniProt PMID:16901643 MGI:3662936 NCBI chrNW_004624740:7,481,719...7,549,809
Ensembl chrNW_004624740:7,482,314...7,549,417 		JBrowse link
G Slit1 slit guidance ligand 1 acts_upstream_of_or_within ISO (PMID:14960623) MGI PMID:14960623 NCBI chrNW_004624737:8,458,444...8,632,316
Ensembl chrNW_004624737:8,460,508...8,632,302 		JBrowse link
G Srf serum response factor acts_upstream_of_or_within ISO (PMID:15837932) MGI PMID:15837932 NCBI chrNW_004624754:16,371,995...16,381,287 JBrowse link
telencephalon cell migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cxcl12 C-X-C motif chemokine ligand 12 ISO RGD PMID:16971524 RGD:2306584 NCBI chrNW_004624922:1,261,228...1,273,755
Ensembl chrNW_004624922:1,261,228...1,273,758 		JBrowse link
G Cxcr4 C-X-C motif chemokine receptor 4 ISO RGD PMID:16971524 RGD:2306584 NCBI chrNW_004624732:35,473,740...35,477,482
Ensembl chrNW_004624732:35,472,760...35,477,528 		JBrowse link
G Foxb1 forkhead box B1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624781:12,182,728...12,185,228
Ensembl chrNW_004624781:12,183,444...12,185,185 		JBrowse link
G Nkx2-1 NK2 homeobox 1 acts_upstream_of_or_within ISO (PMID:18786357), (PMID:20181579) MGI PMID:18786357 PMID:20181579 NCBI chrNW_004624838:300,902...304,944
Ensembl chrNW_004624838:300,458...305,517 		JBrowse link
G Slit1 slit guidance ligand 1 acts_upstream_of_or_within ISO (PMID:14960623) MGI PMID:14960623 NCBI chrNW_004624737:8,458,444...8,632,316
Ensembl chrNW_004624737:8,460,508...8,632,302 		JBrowse link
G Slit2 slit guidance ligand 2 acts_upstream_of_or_within ISO (PMID:14960623) MGI PMID:14960623 NCBI chrNW_004624755:11,470,810...11,819,800
Ensembl chrNW_004624755:11,472,377...11,819,266 		JBrowse link
G Tnr tenascin R acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:15034584) MGI
Ensembl		 PMID:15034584 GO_REF:0000107 NCBI chrNW_004624771:6,291,202...6,725,737
Ensembl chrNW_004624771:6,519,091...6,717,947 		JBrowse link
telencephalon development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Afdn afadin, adherens junction formation factor acts_upstream_of_or_within ISO (PMID:25100583) MGI PMID:25100583 NCBI chrNW_004624785:11,549,805...11,698,029
Ensembl chrNW_004624785:11,551,687...11,697,921 		JBrowse link
G Avpr1a arginine vasopressin receptor 1A ISO RGD PMID:11021977 RGD:2304223 NCBI chrNW_004624802:4,893,172...4,900,177
Ensembl chrNW_004624802:4,894,235...4,900,276 		JBrowse link
G Avpr2 arginine vasopressin receptor 2 ISO RGD PMID:11021977 RGD:2304223 NCBI chrNW_004624946:541,317...543,397
Ensembl chrNW_004624946:541,362...543,492 		JBrowse link
G Bmp2 bone morphogenetic protein 2 acts_upstream_of_or_within ISO (PMID:9187146) MGI PMID:9187146 NCBI chrNW_004624741:7,706,205...7,717,677
Ensembl chrNW_004624741:7,706,236...7,719,484 		JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO (PMID:9187146) MGI PMID:9187146 NCBI chrNW_004624731:15,262,480...15,269,196
Ensembl chrNW_004624731:15,263,274...15,269,743 		JBrowse link
G Cdh2 cadherin 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25100583) Ensembl
MGI		 PMID:25100583 GO_REF:0000107 NCBI chrNW_004624770:4,333,643...4,540,817
Ensembl chrNW_004624770:4,334,202...4,545,470 		JBrowse link
G Cdk5 cyclin dependent kinase 5 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:18032654) MGI
Ensembl		 PMID:18032654 GO_REF:0000107 NCBI chrNW_004624800:5,562,468...5,566,458
Ensembl chrNW_004624800:5,562,462...5,569,937 		JBrowse link
G Emx1 empty spiracles homeobox 1 acts_upstream_of_or_within ISO (PMID:25100583) MGI PMID:25100583 NCBI chrNW_004624762:685,331...702,040
Ensembl chrNW_004624762:681,308...701,998 		JBrowse link
G Erbb4 erb-b2 receptor tyrosine kinase 4 ISO RGD PMID:12571115 RGD:2290000 NCBI chrNW_004624765:3,612,781...4,742,219
Ensembl chrNW_004624765:3,613,379...4,734,585 		JBrowse link
G Fas Fas cell surface death receptor ISO RGD PMID:10024361 RGD:8662883 NCBI chrNW_004624791:15,290,022...15,315,848
Ensembl chrNW_004624791:15,289,348...15,315,848 		JBrowse link
G Fezf1 FEZ family zinc finger 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624783:13,715,987...13,719,287
Ensembl chrNW_004624783:13,713,422...13,718,604 		JBrowse link
G Fezf2 FEZ family zinc finger 2 acts_upstream_of_or_within
involved_in		 ISO (PMID:20431123)
(MGI:4454201|PMID:20431123)		 MGI
UniProt		 PMID:20431123 MGI:4454201 NCBI chrNW_004624888:3,462,132...3,467,701
Ensembl chrNW_004624888:3,462,233...3,468,293 		JBrowse link
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO (PMID:16613831) MGI PMID:16613831 NCBI chrNW_004624831:1,251,991...1,259,247
Ensembl chrNW_004624831:1,253,044...1,257,741 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (PMID:10625551), (PMID:19036983), (PMID:19048639) MGI PMID:10625551 PMID:19036983 PMID:19048639 NCBI chrNW_004624740:18,961,395...19,238,760
Ensembl chrNW_004624740:18,975,596...19,235,900 		JBrowse link
G Gmppa GDP-mannose pyrophosphorylase A acts_upstream_of_or_within ISO (PMID:33755596) MGI PMID:33755596 NCBI chrNW_004624823:5,552,044...5,559,037
Ensembl chrNW_004624823:5,550,014...5,559,812 		JBrowse link
G Hes1 hes family bHLH transcription factor 1 acts_upstream_of_or_within ISO (PMID:19050759)
(PMID:18579678)		 MGI PMID:18579678 PMID:19050759 NCBI chrNW_004624730:63,563,848...63,566,303
Ensembl chrNW_004624730:63,563,754...63,566,781 		JBrowse link
G Hes5 hes family bHLH transcription factor 5 acts_upstream_of_or_within ISO (PMID:20431123)
(PMID:18579678)		 MGI PMID:18579678 PMID:20431123 NCBI chrNW_004624818:7,516,279...7,517,654
Ensembl chrNW_004624818:7,516,189...7,518,734 		JBrowse link
G Ift88 intraflagellar transport 88 acts_upstream_of_or_within ISO (PMID:19036983) MGI PMID:19036983 NCBI chrNW_004624776:16,954,368...17,086,377
Ensembl chrNW_004624776:16,954,507...17,086,337 		JBrowse link
G Kat2a lysine acetyltransferase 2A acts_upstream_of_or_within ISO (PMID:17325035) MGI PMID:17325035 NCBI chrNW_004624795:1,782,367...1,787,408
Ensembl chrNW_004624795:1,782,366...1,788,951 		JBrowse link
G Lhx1 LIM homeobox 1 involved_in ISO (MGI:5050079|PMID:7909549) UniProt PMID:7909549 MGI:5050079 NCBI chrNW_004624871:3,954,490...3,961,861
Ensembl chrNW_004624871:3,954,504...3,963,033 		JBrowse link
G Lhx2 LIM homeobox 2 acts_upstream_of_or_within ISO (PMID:11165475), (PMID:11719201), (PMID:17493606)
(PMID:19820705)		 MGI PMID:11165475 PMID:11719201 PMID:17493606 PMID:19820705 NCBI chrNW_004624760:10,951,837...10,982,592 JBrowse link
G Ncor2 nuclear receptor corepressor 2 acts_upstream_of_or_within ISO (PMID:17928865) MGI PMID:17928865 NCBI chrNW_004624747:23,777,645...23,887,804
Ensembl chrNW_004624747:23,777,325...23,865,804 		JBrowse link
G Nkx2-1 NK2 homeobox 1 acts_upstream_of_or_within ISO (PMID:18786356) MGI PMID:18786356 NCBI chrNW_004624838:300,902...304,944
Ensembl chrNW_004624838:300,458...305,517 		JBrowse link
G Nrgn neurogranin ISO RGD PMID:8783271 RGD:9835396 NCBI chrNW_004624927:753,967...762,663
Ensembl chrNW_004624927:753,956...762,662 		JBrowse link
G Oxtr oxytocin receptor ISO RGD PMID:11021977 RGD:2304223 NCBI chrNW_004624731:3,367,645...3,384,815
Ensembl chrNW_004624731:3,370,701...3,385,640 		JBrowse link
G Pfdn1 prefoldin subunit 1 acts_upstream_of_or_within ISO (PMID:18566413) MGI PMID:18566413 NCBI chrNW_004624743:33,012,920...33,083,776
Ensembl chrNW_004624743:33,012,922...33,083,654 		JBrowse link
G Rfx4 regulatory factor X4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19887680) Ensembl
MGI		 PMID:19887680 GO_REF:0000107 NCBI chrNW_004624750:2,722,790...2,869,676
Ensembl chrNW_004624750:2,722,696...2,869,668 		JBrowse link
G Rpgrip1l RPGRIP1 like acts_upstream_of_or_within ISO (PMID:17558409) MGI PMID:17558409 NCBI chrNW_004624757:3,080,162...3,172,750
Ensembl chrNW_004624757:3,079,712...3,172,115 		JBrowse link
G Scn5a sodium voltage-gated channel alpha subunit 5 ISO RGD PMID:22331407 RGD:6484221 NCBI chrNW_004624731:2,401,358...2,498,212
Ensembl chrNW_004624731:2,401,380...2,498,211 		JBrowse link
G Six3 SIX homeobox 3 involved_in
acts_upstream_of_or_within		 ISO (MGI:3813369|PMID:18694563)
(PMID:18094027)		 UniProt
MGI		 PMID:18094027 PMID:18694563 MGI:3813369 NCBI chrNW_004624738:26,379,172...26,391,669
Ensembl chrNW_004624738:26,380,088...26,394,252 		JBrowse link
G Slc1a2 solute carrier family 1 member 2 acts_upstream_of_or_within ISO (PMID:9180080) MGI PMID:9180080 NCBI chrNW_004624767:11,768,942...11,919,315
Ensembl chrNW_004624767:11,768,951...11,911,017 		JBrowse link
G Slc8a1 solute carrier family 8 member A1 ISO RGD PMID:12502534 RGD:2316981 NCBI chrNW_004624738:21,648,277...22,026,385
Ensembl chrNW_004624738:21,651,489...21,939,927 		JBrowse link
G Slc8a2 solute carrier family 8 member A2 ISO RGD PMID:12502534 RGD:2316981 NCBI chrNW_004624832:6,333,672...6,359,536
Ensembl chrNW_004624832:6,333,677...6,361,888 		JBrowse link
G Slc8a3 solute carrier family 8 member A3 ISO RGD PMID:11036162 RGD:2316983 NCBI chrNW_004624734:30,889,302...31,033,098
Ensembl chrNW_004624734:30,888,952...31,031,975 		JBrowse link
G Tctn1 tectonic family member 1 acts_upstream_of_or_within ISO (PMID:16357211) MGI PMID:16357211 NCBI chrNW_004624747:21,259,515...21,300,180
Ensembl chrNW_004624747:21,265,197...21,300,149 		JBrowse link
telencephalon regionalization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp2 bone morphogenetic protein 2 acts_upstream_of_or_within ISO (PMID:11719201) MGI PMID:11719201 NCBI chrNW_004624741:7,706,205...7,717,677
Ensembl chrNW_004624741:7,706,236...7,719,484 		JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO (PMID:16855091)
(PMID:11719201)		 MGI PMID:11719201 PMID:16855091 NCBI chrNW_004624731:15,262,480...15,269,196
Ensembl chrNW_004624731:15,263,274...15,269,743 		JBrowse link
G Gsx2 GS homeobox 2 acts_upstream_of_or_within ISO (PMID:18701439) MGI PMID:18701439 NCBI chrNW_004624761:15,387,217...15,389,404
Ensembl chrNW_004624761:15,387,674...15,389,229 		JBrowse link
G Lhx2 LIM homeobox 2 acts_upstream_of_or_within ISO (PMID:11719201) MGI PMID:11719201 NCBI chrNW_004624760:10,951,837...10,982,592 JBrowse link
G Otx2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO (PMID:26166575) MGI PMID:26166575 NCBI chrNW_004624884:1,830,645...1,840,213 JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:18701439) MGI
Ensembl		 PMID:18701439 GO_REF:0000107 NCBI chrNW_004624766:20,536,581...20,554,589
Ensembl chrNW_004624766:20,536,233...20,554,759 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO (PMID:11060228) RGD
MGI		 PMID:9811591 PMID:11060228 RGD:2306311 NCBI chrNW_004624800:2,202,986...2,215,309
Ensembl chrNW_004624800:2,203,393...2,212,068 		JBrowse link
G Six3 SIX homeobox 3 involved_in ISO (MGI:3813369|PMID:18694563) UniProt PMID:18694563 MGI:3813369 NCBI chrNW_004624738:26,379,172...26,391,669
Ensembl chrNW_004624738:26,380,088...26,394,252 		JBrowse link
thalamus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp1a3 ATPase Na+/K+ transporting subunit alpha 3 acts_upstream_of_or_within ISO (PMID:23527305) MGI PMID:23527305 NCBI chrNW_004624907:715,109...736,040
Ensembl chrNW_004624907:715,094...736,432 		JBrowse link
G Cntnap2 contactin associated protein 2 involved_in ISO (PMID:18179893) BHF-UCL PMID:18179893 NCBI chrNW_004624800:7,182,588...9,280,407
Ensembl chrNW_004624800:7,181,020...9,279,678 		JBrowse link
G Foxb1 forkhead box B1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624781:12,182,728...12,185,228
Ensembl chrNW_004624781:12,183,444...12,185,185 		JBrowse link
G Gbx2 gastrulation brain homeobox 2 acts_upstream_of_or_within ISO (PMID:19279136) MGI PMID:19279136 NCBI chrNW_004624847:1,878,946...1,881,794
Ensembl chrNW_004624847:1,879,007...1,881,669 		JBrowse link
G Kif5a kinesin family member 5A ISO RGD PMID:9349526 RGD:12792964 NCBI chrNW_004624802:10,375,132...10,409,575
Ensembl chrNW_004624802:10,375,774...10,409,566 		JBrowse link
G LOC101712532 cytochrome b-c1 complex subunit 8 involved_in ISO (MGI:3662936|PMID:16901643) UniProt PMID:16901643 MGI:3662936 NCBI chrNW_004624733:39,233,359...39,235,008
Ensembl chrNW_004624733:39,233,359...39,234,945 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:15342729) MGI PMID:15342729 NCBI chrNW_004624752:25,605,444...25,756,573
Ensembl chrNW_004624752:25,605,302...25,751,893 		JBrowse link
G Mecp2 methyl-CpG binding protein 2 ISO RGD PMID:12605461 RGD:12790706 NCBI chrNW_004624946:620,581...685,339
Ensembl chrNW_004624946:628,284...685,246 		JBrowse link
G Ncam1 neural cell adhesion molecule 1 ISO RGD PMID:17292800 RGD:2326015 NCBI chrNW_004624784:8,339,582...8,635,025
Ensembl chrNW_004624784:8,339,916...8,636,012 		JBrowse link
G Ncor1 nuclear receptor corepressor 1 acts_upstream_of_or_within ISO (PMID:11030619) MGI PMID:11030619 NCBI chrNW_004624877:4,203,125...4,379,891
Ensembl chrNW_004624877:4,233,282...4,377,211 		JBrowse link
G Ogdh oxoglutarate dehydrogenase involved_in ISO (MGI:3662936|PMID:16901643) UniProt PMID:16901643 MGI:3662936 NCBI chrNW_004624740:7,481,719...7,549,809
Ensembl chrNW_004624740:7,482,314...7,549,417 		JBrowse link
G Olig2 oligodendrocyte transcription factor 2 acts_upstream_of_or_within ISO (PMID:19357274) MGI PMID:19357274 NCBI chrNW_004624745:21,270,804...21,274,225
Ensembl chrNW_004624745:21,270,965...21,272,932 		JBrowse link
G Ptchd1 patched domain containing 1 involved_in ISO (MGI:5779981|PMID:27007844) UniProt PMID:27007844 MGI:5779981 NCBI chrNW_004624829:8,458,430...8,513,011
Ensembl chrNW_004624829:8,458,628...8,512,511 		JBrowse link
G Ptn pleiotrophin ISO RGD PMID:10051750 RGD:10043838 NCBI chrNW_004624765:17,523,086...17,625,264
Ensembl chrNW_004624765:17,522,916...17,548,184 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO (PMID:19357274) MGI PMID:19357274 NCBI chrNW_004624800:2,202,986...2,215,309
Ensembl chrNW_004624800:2,203,393...2,212,068 		JBrowse link
G Smo smoothened, frizzled class receptor acts_upstream_of_or_within ISO (PMID:19357274) MGI PMID:19357274 NCBI chrNW_004624783:7,012,385...7,039,302
Ensembl chrNW_004624783:7,011,899...7,039,921 		JBrowse link
G Srd5a1 steroid 5 alpha-reductase 1 ISO RGD PMID:8770891 RGD:4892048 NCBI chrNW_004624751:4,309,518...4,335,332
Ensembl chrNW_004624751:4,309,447...4,336,083 		JBrowse link
G Tal2 TAL bHLH transcription factor 2 acts_upstream_of_or_within ISO (PMID:11071772) MGI PMID:11071772 NCBI chrNW_004624758:5,750,458...5,755,861
Ensembl chrNW_004624758:5,747,765...5,863,612 		JBrowse link
thyroid-stimulating hormone-secreting cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp2 bone morphogenetic protein 2 acts_upstream_of_or_within ISO (PMID:9463347) MGI PMID:9463347 NCBI chrNW_004624741:7,706,205...7,717,677
Ensembl chrNW_004624741:7,706,236...7,719,484 		JBrowse link
G Fgf2 fibroblast growth factor 2 acts_upstream_of_or_within ISO (PMID:9463347) MGI PMID:9463347 NCBI chrNW_004624777:3,268,674...3,321,424
Ensembl chrNW_004624777:3,268,953...3,321,145 		JBrowse link
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO (PMID:9463347) MGI PMID:9463347 NCBI chrNW_004624831:1,251,991...1,259,247
Ensembl chrNW_004624831:1,253,044...1,257,741 		JBrowse link
G Gata2 GATA binding protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16543408) Ensembl
MGI		 PMID:16543408 GO_REF:0000107 NCBI chrNW_004624961:147,685...155,614
Ensembl chrNW_004624961:143,358...154,003 		JBrowse link
G Lhx3 LIM homeobox 3 acts_upstream_of_or_within ISO (PMID:8638120) MGI PMID:8638120 NCBI chrNW_004624760:1,428,496...1,435,414
Ensembl chrNW_004624760:1,429,384...1,435,414 		JBrowse link
G Wnt4 Wnt family member 4 acts_upstream_of_or_within ISO (PMID:18351662) MGI PMID:18351662 NCBI chrNW_004624764:6,913,027...6,934,650
Ensembl chrNW_004624764:6,921,811...6,933,392 		JBrowse link
ventricular zone neuroblast division term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dct dopachrome tautomerase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16857183) TreeGrafter
MGI		 PMID:16857183 GO_REF:0000118 NCBI chrNW_004624879:1,241,593...1,346,765
Ensembl chrNW_004624879:1,241,910...1,279,444 		JBrowse link
G Fgfr1 fibroblast growth factor receptor 1 involved_in ISO (MGI:4452541|PMID:20410112) UniProt PMID:20410112 MGI:4452541 NCBI chrNW_004624780:5,161,245...5,212,641
Ensembl chrNW_004624780:5,161,073...5,213,870 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 involved_in ISO (MGI:4452541|PMID:20410112) UniProt PMID:20410112 MGI:4452541 NCBI chrNW_004624737:25,052,698...25,158,346
Ensembl chrNW_004624737:25,052,606...25,158,529 		JBrowse link
Wnt signaling pathway involved in forebrain neuroblast division term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:14715945)
(PMID:16920270)		 MGI PMID:14715945 PMID:16920270 NCBI chrNW_004624752:25,605,444...25,756,573
Ensembl chrNW_004624752:25,605,302...25,751,893 		JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within ISO (PMID:10631167) MGI PMID:10631167 NCBI chrNW_004624937:816,752...845,866
Ensembl chrNW_004624937:816,759...845,458 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15093
    developmental process 6156
      anatomical structure development 5795
        forebrain development 537
          cell proliferation in forebrain + 39
          cerebral cortex neuron differentiation + 31
          diencephalon development + 102
          forebrain astrocyte differentiation + 3
          forebrain cell migration + 74
          forebrain generation of neurons + 66
          forebrain morphogenesis + 18
          forebrain regionalization + 27
          limbic system development + 169
          telencephalon development + 370
Path 2
Term Annotations click to browse term
  biological_process 15093
    developmental process 6156
      anatomical structure development 5795
        multicellular organism development 4711
          system development 4117
            nervous system development 2595
              central nervous system development 1130
                brain development 855
                  forebrain development 537
                    cell proliferation in forebrain + 39
                    cerebral cortex neuron differentiation + 31
                    diencephalon development + 102
                    forebrain astrocyte differentiation + 3
                    forebrain cell migration + 74
                    forebrain generation of neurons + 66
                    forebrain morphogenesis + 18
                    forebrain regionalization + 27
                    limbic system development + 169
                    telencephalon development + 370
paths to the root